miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 1761 0.66 0.699839
Target:  5'- aAUGCCGguuGCCC--GGUAUGGgGGCc -3'
miRNA:   3'- gUGCGGCac-CGGGacUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 2674 0.73 0.31739
Target:  5'- -cCGCCaccGGCCCcgGAGCAgaugccagGGCGGCg -3'
miRNA:   3'- guGCGGca-CCGGGa-CUCGUa-------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 2889 0.69 0.486805
Target:  5'- gGCGCCGggccgccGCCCUG-GCAUcugcuccggggccGGUGGCg -3'
miRNA:   3'- gUGCGGCac-----CGGGACuCGUA-------------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 3009 0.69 0.524917
Target:  5'- uGgGCUGUaGGCCCucuccucccuUGAGCGUGGCGu- -3'
miRNA:   3'- gUgCGGCA-CCGGG----------ACUCGUACCGCcg -5'
33366 5' -61.6 NC_007605.1 + 4047 0.68 0.542963
Target:  5'- cUACGCgCGUGG-CCUGGGCGugaagcugaccuuUGGCucGGCc -3'
miRNA:   3'- -GUGCG-GCACCgGGACUCGU-------------ACCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 4407 0.67 0.621677
Target:  5'- cCugGUgGagaUGGCCCUG-GCcgGGCaGCg -3'
miRNA:   3'- -GugCGgC---ACCGGGACuCGuaCCGcCG- -5'
33366 5' -61.6 NC_007605.1 + 7356 0.68 0.592288
Target:  5'- uCACGCCc---CCUUGGGagGUGGCGGCa -3'
miRNA:   3'- -GUGCGGcaccGGGACUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 10200 0.67 0.651131
Target:  5'- aAC-CUGUGGCaCCUGcGCA-GGCGGa -3'
miRNA:   3'- gUGcGGCACCG-GGACuCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 12388 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 12507 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 12915 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 13752 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 15457 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 15576 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 15984 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 16821 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 18526 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 18645 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 19053 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 19890 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.