miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 58891 0.69 0.478613
Target:  5'- cCugGCCGaGGUCCUGcacGGCAguuacaacggGGUGGCc -3'
miRNA:   3'- -GugCGGCaCCGGGAC---UCGUa---------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 59001 0.75 0.215362
Target:  5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3'
miRNA:   3'- gUGcGGCACCGGGACUCguaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 60288 0.76 0.205405
Target:  5'- --gGCCGUGGCCa-GGGCccaccUGGCGGCg -3'
miRNA:   3'- gugCGGCACCGGgaCUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61620 0.71 0.392662
Target:  5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3'
miRNA:   3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 61719 0.66 0.709455
Target:  5'- -uCGCCcguGUGGCCC-GGGCGgccuaccugcgGGCGGa -3'
miRNA:   3'- guGCGG---CACCGGGaCUCGUa----------CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 61734 0.66 0.699839
Target:  5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3'
miRNA:   3'- gugcGGCACCGGgacuCG---UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 62244 0.7 0.425853
Target:  5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3'
miRNA:   3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 62341 0.66 0.66093
Target:  5'- --gGCCGUGGagCUggugGAGCAcagUGGgGGCg -3'
miRNA:   3'- gugCGGCACCg-GGa---CUCGU---ACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 63023 0.67 0.631497
Target:  5'- aCGCGCa--GGCCuccucgCUGAGUgcGGCGGCc -3'
miRNA:   3'- -GUGCGgcaCCGG------GACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63066 0.68 0.582537
Target:  5'- aGgGCUGcUGGCCCcggGGGagGUGGCGGUc -3'
miRNA:   3'- gUgCGGC-ACCGGGa--CUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63378 0.66 0.679485
Target:  5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3'
miRNA:   3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63586 0.69 0.478613
Target:  5'- gACG-CGUGGCUCUccggcggcgccGGGgGUGGCGGUg -3'
miRNA:   3'- gUGCgGCACCGGGA-----------CUCgUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 67686 0.68 0.572819
Target:  5'- -cCGCCGUGGCCaacgcaGGCAcGGCcgGGCu -3'
miRNA:   3'- guGCGGCACCGGgac---UCGUaCCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 71592 0.71 0.409048
Target:  5'- cCACGCUGgagGGCCgUGcaGGUAUGGCgugGGCc -3'
miRNA:   3'- -GUGCGGCa--CCGGgAC--UCGUACCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 72017 0.66 0.709455
Target:  5'- --gGCCGgGGCCgUgGAGCcgGG-GGCa -3'
miRNA:   3'- gugCGGCaCCGGgA-CUCGuaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 73603 0.67 0.631497
Target:  5'- --gGaCGUGGCCCggGAGC-UGGUGGa -3'
miRNA:   3'- gugCgGCACCGGGa-CUCGuACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 77601 0.67 0.651131
Target:  5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3'
miRNA:   3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 87534 0.66 0.698875
Target:  5'- uGCGCUucacuggGUGcGUCUUGGGCGUGGgccaaGGCa -3'
miRNA:   3'- gUGCGG-------CAC-CGGGACUCGUACCg----CCG- -5'
33366 5' -61.6 NC_007605.1 + 94371 0.66 0.66093
Target:  5'- uGgGCCGUGGUUaaGGccuGCAcGGCGGCu -3'
miRNA:   3'- gUgCGGCACCGGgaCU---CGUaCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.