miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 106121 0.67 0.641317
Target:  5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3'
miRNA:   3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 107408 0.67 0.625605
Target:  5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3'
miRNA:   3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 115407 0.67 0.651131
Target:  5'- gGCGgCGgaGGCC--GAGCAgggacUGGCGGCa -3'
miRNA:   3'- gUGCgGCa-CCGGgaCUCGU-----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 115509 0.67 0.611865
Target:  5'- aGgGCCGgGGCCgaGAcCAaGGCGGCu -3'
miRNA:   3'- gUgCGGCaCCGGgaCUcGUaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 120231 0.66 0.690171
Target:  5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3'
miRNA:   3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5'
33366 5' -61.6 NC_007605.1 + 122137 0.71 0.400802
Target:  5'- uGCGCauaacaaagGUGGCaacauCCUGGuGCAUGGUGGCa -3'
miRNA:   3'- gUGCGg--------CACCG-----GGACU-CGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 129540 0.77 0.177899
Target:  5'- -uUGaCCGUGGCCaucAGCAUGGCGGCc -3'
miRNA:   3'- guGC-GGCACCGGgacUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 133048 0.67 0.618732
Target:  5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3'
miRNA:   3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 133224 0.71 0.417399
Target:  5'- gGgGCCuGUGuCCCUGGGCAgucgGGCGGg -3'
miRNA:   3'- gUgCGG-CACcGGGACUCGUa---CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 134358 0.66 0.670709
Target:  5'- gACGCCGggUGGCcgCCUcGGCcagguUGGCGGUc -3'
miRNA:   3'- gUGCGGC--ACCG--GGAcUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 135016 1.09 0.00094
Target:  5'- gCACGCCGUGGCCCUGAGCAUGGCGGCc -3'
miRNA:   3'- -GUGCGGCACCGGGACUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 136530 0.67 0.621677
Target:  5'- gACGCUGaugaGGUCCUG-GCccgcGGCGGCc -3'
miRNA:   3'- gUGCGGCa---CCGGGACuCGua--CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 136548 0.67 0.615788
Target:  5'- cUACGCCG-GGCCCgcGGGCggGGacccgggugccuucuUGGCg -3'
miRNA:   3'- -GUGCGGCaCCGGGa-CUCGuaCC---------------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 137440 0.66 0.680458
Target:  5'- uGgGCUGacacagacuUGGCCUUGGGgGUGGUGGg -3'
miRNA:   3'- gUgCGGC---------ACCGGGACUCgUACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 140704 0.69 0.495063
Target:  5'- uGCaGCCGgguccggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa-----------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 140805 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 140907 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141009 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141111 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141213 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.