Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 133224 | 0.71 | 0.417399 |
Target: 5'- gGgGCCuGUGuCCCUGGGCAgucgGGCGGg -3' miRNA: 3'- gUgCGG-CACcGGGACUCGUa---CCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 133048 | 0.67 | 0.618732 |
Target: 5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3' miRNA: 3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 129540 | 0.77 | 0.177899 |
Target: 5'- -uUGaCCGUGGCCaucAGCAUGGCGGCc -3' miRNA: 3'- guGC-GGCACCGGgacUCGUACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 122137 | 0.71 | 0.400802 |
Target: 5'- uGCGCauaacaaagGUGGCaacauCCUGGuGCAUGGUGGCa -3' miRNA: 3'- gUGCGg--------CACCG-----GGACU-CGUACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 120231 | 0.66 | 0.690171 |
Target: 5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3' miRNA: 3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 115509 | 0.67 | 0.611865 |
Target: 5'- aGgGCCGgGGCCgaGAcCAaGGCGGCu -3' miRNA: 3'- gUgCGGCaCCGGgaCUcGUaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 115407 | 0.67 | 0.651131 |
Target: 5'- gGCGgCGgaGGCC--GAGCAgggacUGGCGGCa -3' miRNA: 3'- gUGCgGCa-CCGGgaCUCGU-----ACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 107408 | 0.67 | 0.625605 |
Target: 5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3' miRNA: 3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 106121 | 0.67 | 0.641317 |
Target: 5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3' miRNA: 3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 94371 | 0.66 | 0.66093 |
Target: 5'- uGgGCCGUGGUUaaGGccuGCAcGGCGGCu -3' miRNA: 3'- gUgCGGCACCGGgaCU---CGUaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 87534 | 0.66 | 0.698875 |
Target: 5'- uGCGCUucacuggGUGcGUCUUGGGCGUGGgccaaGGCa -3' miRNA: 3'- gUGCGG-------CAC-CGGGACUCGUACCg----CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 77601 | 0.67 | 0.651131 |
Target: 5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3' miRNA: 3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 73603 | 0.67 | 0.631497 |
Target: 5'- --gGaCGUGGCCCggGAGC-UGGUGGa -3' miRNA: 3'- gugCgGCACCGGGa-CUCGuACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 72017 | 0.66 | 0.709455 |
Target: 5'- --gGCCGgGGCCgUgGAGCcgGG-GGCa -3' miRNA: 3'- gugCGGCaCCGGgA-CUCGuaCCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 71592 | 0.71 | 0.409048 |
Target: 5'- cCACGCUGgagGGCCgUGcaGGUAUGGCgugGGCc -3' miRNA: 3'- -GUGCGGCa--CCGGgAC--UCGUACCG---CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 67686 | 0.68 | 0.572819 |
Target: 5'- -cCGCCGUGGCCaacgcaGGCAcGGCcgGGCu -3' miRNA: 3'- guGCGGCACCGGgac---UCGUaCCG--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 63586 | 0.69 | 0.478613 |
Target: 5'- gACG-CGUGGCUCUccggcggcgccGGGgGUGGCGGUg -3' miRNA: 3'- gUGCgGCACCGGGA-----------CUCgUACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 63378 | 0.66 | 0.679485 |
Target: 5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3' miRNA: 3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 63066 | 0.68 | 0.582537 |
Target: 5'- aGgGCUGcUGGCCCcggGGGagGUGGCGGUc -3' miRNA: 3'- gUgCGGC-ACCGGGa--CUCg-UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 63023 | 0.67 | 0.631497 |
Target: 5'- aCGCGCa--GGCCuccucgCUGAGUgcGGCGGCc -3' miRNA: 3'- -GUGCGgcaCCGG------GACUCGuaCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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