miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 62341 0.66 0.66093
Target:  5'- --gGCCGUGGagCUggugGAGCAcagUGGgGGCg -3'
miRNA:   3'- gugCGGCACCg-GGa---CUCGU---ACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 62244 0.7 0.425853
Target:  5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3'
miRNA:   3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61734 0.66 0.699839
Target:  5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3'
miRNA:   3'- gugcGGCACCGGgacuCG---UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61719 0.66 0.709455
Target:  5'- -uCGCCcguGUGGCCC-GGGCGgccuaccugcgGGCGGa -3'
miRNA:   3'- guGCGG---CACCGGGaCUCGUa----------CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 61620 0.71 0.392662
Target:  5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3'
miRNA:   3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 60288 0.76 0.205405
Target:  5'- --gGCCGUGGCCa-GGGCccaccUGGCGGCg -3'
miRNA:   3'- gugCGGCACCGGgaCUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 59001 0.75 0.215362
Target:  5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3'
miRNA:   3'- gUGcGGCACCGGGACUCguaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 58891 0.69 0.478613
Target:  5'- cCugGCCGaGGUCCUGcacGGCAguuacaacggGGUGGCc -3'
miRNA:   3'- -GugCGGCaCCGGGAC---UCGUa---------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 54159 0.72 0.338781
Target:  5'- aGCGCCGaguccgaGGCcagCCUGGGCggGGCGGUu -3'
miRNA:   3'- gUGCGGCa------CCG---GGACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 54025 0.68 0.534388
Target:  5'- -cCGCCcUGGCCC-GGGCA--GCGGCc -3'
miRNA:   3'- guGCGGcACCGGGaCUCGUacCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 53822 0.66 0.699839
Target:  5'- --aGCCGUucccGGCCgCUGcccgGGCcagGGCGGCc -3'
miRNA:   3'- gugCGGCA----CCGG-GAC----UCGua-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 52879 0.66 0.66093
Target:  5'- gGCGgCGgcGGCgCUGGGCG-GGCGGa -3'
miRNA:   3'- gUGCgGCa-CCGgGACUCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 50594 0.66 0.670709
Target:  5'- -gUGCCaaaGGCCacggGGGCGcUGGCGGCc -3'
miRNA:   3'- guGCGGca-CCGGga--CUCGU-ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 50401 0.7 0.469591
Target:  5'- aGCGCCcccGUGGCCUUuGGCAcgGGCcuGGCa -3'
miRNA:   3'- gUGCGG---CACCGGGAcUCGUa-CCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 48465 0.66 0.680458
Target:  5'- gGgGCCGgggGGCCCugccUGAGCcgGGauguuuucgUGGCg -3'
miRNA:   3'- gUgCGGCa--CCGGG----ACUCGuaCC---------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 47523 0.66 0.690171
Target:  5'- uCACgGCCGUGGCCCUGcuccugauGUuucugaGGUGGa -3'
miRNA:   3'- -GUG-CGGCACCGGGACu-------CGua----CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 47266 0.68 0.553504
Target:  5'- gAC-CCGcgaGGCCuuCUGGGCGuUGGCGGCc -3'
miRNA:   3'- gUGcGGCa--CCGG--GACUCGU-ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39640 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39515 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.