Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 39390 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 39265 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 39140 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 39015 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 38766 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 38641 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 38516 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 38391 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 38266 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 35234 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 34397 | 0.66 | 0.709455 |
Target: 5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3' miRNA: 3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 33989 | 0.7 | 0.440455 |
Target: 5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3' miRNA: 3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 33871 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 32165 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 31328 | 0.66 | 0.709455 |
Target: 5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3' miRNA: 3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 30921 | 0.74 | 0.277701 |
Target: 5'- -cCGCCGggUGGCCCUGGGUAagucUGGgaGGCa -3' miRNA: 3'- guGCGGC--ACCGGGACUCGU----ACCg-CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 30802 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 29097 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 28259 | 0.66 | 0.709455 |
Target: 5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3' miRNA: 3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 27852 | 0.7 | 0.440455 |
Target: 5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3' miRNA: 3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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