miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 140907 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 24783 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 27852 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 33989 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 50401 0.7 0.469591
Target:  5'- aGCGCCcccGUGGCCUUuGGCAcgGGCcuGGCa -3'
miRNA:   3'- gUGCGG---CACCGGGAcUCGUa-CCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 163256 0.69 0.474994
Target:  5'- gCugGCCGgggucucgugcgaGGCCUccAGCAUGGCGGg -3'
miRNA:   3'- -GugCGGCa------------CCGGGacUCGUACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 63586 0.69 0.478613
Target:  5'- gACG-CGUGGCUCUccggcggcgccGGGgGUGGCGGUg -3'
miRNA:   3'- gUGCgGCACCGGGA-----------CUCgUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 140704 0.69 0.495063
Target:  5'- uGCaGCCGgguccggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa-----------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 140805 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 21714 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 18645 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 15576 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 60288 0.76 0.205405
Target:  5'- --gGCCGUGGCCa-GGGCccaccUGGCGGCg -3'
miRNA:   3'- gugCGGCACCGGgaCUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 30921 0.74 0.277701
Target:  5'- -cCGCCGggUGGCCCUGGGUAagucUGGgaGGCa -3'
miRNA:   3'- guGCGGC--ACCGGGACUCGU----ACCg-CCG- -5'
33366 5' -61.6 NC_007605.1 + 2674 0.73 0.31739
Target:  5'- -cCGCCaccGGCCCcgGAGCAgaugccagGGCGGCg -3'
miRNA:   3'- guGCGGca-CCGGGa-CUCGUa-------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 54159 0.72 0.338781
Target:  5'- aGCGCCGaguccgaGGCcagCCUGGGCggGGCGGUu -3'
miRNA:   3'- gUGCGGCa------CCG---GGACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 162760 0.72 0.353614
Target:  5'- aCACgGCCGgggcccGGCCCUcgcagagcGAGCAcaugggacUGGCGGCc -3'
miRNA:   3'- -GUG-CGGCa-----CCGGGA--------CUCGU--------ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 122137 0.71 0.400802
Target:  5'- uGCGCauaacaaagGUGGCaacauCCUGGuGCAUGGUGGCa -3'
miRNA:   3'- gUGCGg--------CACCG-----GGACU-CGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 71592 0.71 0.409048
Target:  5'- cCACGCUGgagGGCCgUGcaGGUAUGGCgugGGCc -3'
miRNA:   3'- -GUGCGGCa--CCGGgAC--UCGUACCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 12507 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.