Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 142232 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 142130 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 142028 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141926 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141824 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141722 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141621 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 140907 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141009 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141111 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141213 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141315 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141417 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141519 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 61620 | 0.71 | 0.392662 |
Target: 5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3' miRNA: 3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 159994 | 0.72 | 0.331536 |
Target: 5'- aGCGUCGccUGGCCCUGGuGCG-GGgGGCc -3' miRNA: 3'- gUGCGGC--ACCGGGACU-CGUaCCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 151577 | 0.73 | 0.31739 |
Target: 5'- cCugGCCGUGGCCagguacGGGC-UGGUGGg -3' miRNA: 3'- -GugCGGCACCGGga----CUCGuACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 59001 | 0.75 | 0.215362 |
Target: 5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3' miRNA: 3'- gUGcGGCACCGGGACUCguaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 159923 | 0.76 | 0.210332 |
Target: 5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3' miRNA: 3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 12915 | 0.66 | 0.709455 |
Target: 5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3' miRNA: 3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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