Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 115509 | 0.67 | 0.611865 |
Target: 5'- aGgGCCGgGGCCgaGAcCAaGGCGGCu -3' miRNA: 3'- gUgCGGCaCCGGgaCUcGUaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 133048 | 0.67 | 0.618732 |
Target: 5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3' miRNA: 3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 136530 | 0.67 | 0.621677 |
Target: 5'- gACGCUGaugaGGUCCUG-GCccgcGGCGGCc -3' miRNA: 3'- gUGCGGCa---CCGGGACuCGua--CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 73603 | 0.67 | 0.631497 |
Target: 5'- --gGaCGUGGCCCggGAGC-UGGUGGa -3' miRNA: 3'- gugCgGCACCGGGa-CUCGuACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 151530 | 0.67 | 0.641317 |
Target: 5'- -cCGCCGUGaacucuGCCCUucaGuGUcUGGCGGCc -3' miRNA: 3'- guGCGGCAC------CGGGA---CuCGuACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 10200 | 0.67 | 0.651131 |
Target: 5'- aAC-CUGUGGCaCCUGcGCA-GGCGGa -3' miRNA: 3'- gUGcGGCACCG-GGACuCGUaCCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 21595 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 24664 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 27733 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 159923 | 0.76 | 0.210332 |
Target: 5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3' miRNA: 3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 59001 | 0.75 | 0.215362 |
Target: 5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3' miRNA: 3'- gUGcGGCACCGGGACUCguaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 151577 | 0.73 | 0.31739 |
Target: 5'- cCugGCCGUGGCCagguacGGGC-UGGUGGg -3' miRNA: 3'- -GugCGGCACCGGga----CUCGuACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 159994 | 0.72 | 0.331536 |
Target: 5'- aGCGUCGccUGGCCCUGGuGCG-GGgGGCc -3' miRNA: 3'- gUGCGGC--ACCGGGACU-CGUaCCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 61620 | 0.71 | 0.392662 |
Target: 5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3' miRNA: 3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 133224 | 0.71 | 0.417399 |
Target: 5'- gGgGCCuGUGuCCCUGGGCAgucgGGCGGg -3' miRNA: 3'- gUgCGG-CACcGGGACUCGUa---CCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 62244 | 0.7 | 0.425853 |
Target: 5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3' miRNA: 3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 58891 | 0.69 | 0.478613 |
Target: 5'- cCugGCCGaGGUCCUGcacGGCAguuacaacggGGUGGCc -3' miRNA: 3'- -GugCGGCaCCGGGAC---UCGUa---------CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 2889 | 0.69 | 0.486805 |
Target: 5'- gGCGCCGggccgccGCCCUG-GCAUcugcuccggggccGGUGGCg -3' miRNA: 3'- gUGCGGCac-----CGGGACuCGUA-------------CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 33871 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 30802 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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