miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 135016 1.09 0.00094
Target:  5'- gCACGCCGUGGCCCUGAGCAUGGCGGCc -3'
miRNA:   3'- -GUGCGGCACCGGGACUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 12388 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 54025 0.68 0.534388
Target:  5'- -cCGCCcUGGCCC-GGGCA--GCGGCc -3'
miRNA:   3'- guGCGGcACCGGGaCUCGUacCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 12915 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 159994 0.72 0.331536
Target:  5'- aGCGUCGccUGGCCCUGGuGCG-GGgGGCc -3'
miRNA:   3'- gUGCGGC--ACCGGGACU-CGUaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 61620 0.71 0.392662
Target:  5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3'
miRNA:   3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 62244 0.7 0.425853
Target:  5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3'
miRNA:   3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 58891 0.69 0.478613
Target:  5'- cCugGCCGaGGUCCUGcacGGCAguuacaacggGGUGGCc -3'
miRNA:   3'- -GugCGGCaCCGGGAC---UCGUa---------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 30802 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 15457 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 24664 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 33871 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 159923 0.76 0.210332
Target:  5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3'
miRNA:   3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5'
33366 5' -61.6 NC_007605.1 + 21595 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 59001 0.75 0.215362
Target:  5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3'
miRNA:   3'- gUGcGGCACCGGGACUCguaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 2889 0.69 0.486805
Target:  5'- gGCGCCGggccgccGCCCUG-GCAUcugcuccggggccGGUGGCg -3'
miRNA:   3'- gUGCGGCac-----CGGGACuCGUA-------------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 18526 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 3009 0.69 0.524917
Target:  5'- uGgGCUGUaGGCCCucuccucccuUGAGCGUGGCGu- -3'
miRNA:   3'- gUgCGGCA-CCGGG----------ACUCGUACCGCcg -5'
33366 5' -61.6 NC_007605.1 + 151577 0.73 0.31739
Target:  5'- cCugGCCGUGGCCagguacGGGC-UGGUGGg -3'
miRNA:   3'- -GugCGGCACCGGga----CUCGuACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 133224 0.71 0.417399
Target:  5'- gGgGCCuGUGuCCCUGGGCAgucgGGCGGg -3'
miRNA:   3'- gUgCGG-CACcGGGACUCGUa---CCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.