miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 159923 0.76 0.210332
Target:  5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3'
miRNA:   3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5'
33366 5' -61.6 NC_007605.1 + 135016 1.09 0.00094
Target:  5'- gCACGCCGUGGCCCUGAGCAUGGCGGCc -3'
miRNA:   3'- -GUGCGGCACCGGGACUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 28259 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 62341 0.66 0.66093
Target:  5'- --gGCCGUGGagCUggugGAGCAcagUGGgGGCg -3'
miRNA:   3'- gugCGGCACCg-GGa---CUCGU---ACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 13752 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 26028 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 35234 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 10200 0.67 0.651131
Target:  5'- aAC-CUGUGGCaCCUGcGCA-GGCGGa -3'
miRNA:   3'- gUGcGGCACCG-GGACuCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 133048 0.67 0.618732
Target:  5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3'
miRNA:   3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 54025 0.68 0.534388
Target:  5'- -cCGCCcUGGCCC-GGGCA--GCGGCc -3'
miRNA:   3'- guGCGGcACCGGGaCUCGUacCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 21595 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 30802 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 62244 0.7 0.425853
Target:  5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3'
miRNA:   3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 159994 0.72 0.331536
Target:  5'- aGCGUCGccUGGCCCUGGuGCG-GGgGGCc -3'
miRNA:   3'- gUGCGGC--ACCGGGACU-CGUaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 72017 0.66 0.709455
Target:  5'- --gGCCGgGGCCgUgGAGCcgGG-GGCa -3'
miRNA:   3'- gugCGGCaCCGGgA-CUCGuaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 120231 0.66 0.690171
Target:  5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3'
miRNA:   3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5'
33366 5' -61.6 NC_007605.1 + 47523 0.66 0.690171
Target:  5'- uCACgGCCGUGGCCCUGcuccugauGUuucugaGGUGGa -3'
miRNA:   3'- -GUG-CGGCACCGGGACu-------CGua----CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 141824 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 33989 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 141926 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.