miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 141722 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141621 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141519 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 122137 0.71 0.400802
Target:  5'- uGCGCauaacaaagGUGGCaacauCCUGGuGCAUGGUGGCa -3'
miRNA:   3'- gUGCGg--------CACCG-----GGACU-CGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 27852 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 33989 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 4407 0.67 0.621677
Target:  5'- cCugGUgGagaUGGCCCUG-GCcgGGCaGCg -3'
miRNA:   3'- -GugCGgC---ACCGGGACuCGuaCCGcCG- -5'
33366 5' -61.6 NC_007605.1 + 107408 0.67 0.625605
Target:  5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3'
miRNA:   3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 63023 0.67 0.631497
Target:  5'- aCGCGCa--GGCCuccucgCUGAGUgcGGCGGCc -3'
miRNA:   3'- -GUGCGgcaCCGG------GACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141417 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 77601 0.67 0.651131
Target:  5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3'
miRNA:   3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 52879 0.66 0.66093
Target:  5'- gGCGgCGgcGGCgCUGGGCG-GGCGGa -3'
miRNA:   3'- gUGCgGCa-CCGgGACUCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 166748 0.66 0.66093
Target:  5'- gACGuCUG-GGUCCUcgGGGCAggGGUGGCu -3'
miRNA:   3'- gUGC-GGCaCCGGGA--CUCGUa-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63378 0.66 0.679485
Target:  5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3'
miRNA:   3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 47523 0.66 0.690171
Target:  5'- uCACgGCCGUGGCCCUGcuccugauGUuucugaGGUGGa -3'
miRNA:   3'- -GUG-CGGCACCGGGACu-------CGua----CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 120231 0.66 0.690171
Target:  5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3'
miRNA:   3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5'
33366 5' -61.6 NC_007605.1 + 61734 0.66 0.699839
Target:  5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3'
miRNA:   3'- gugcGGCACCGGgacuCG---UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 1761 0.66 0.699839
Target:  5'- aAUGCCGguuGCCC--GGUAUGGgGGCc -3'
miRNA:   3'- gUGCGGCac-CGGGacUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 106121 0.67 0.641317
Target:  5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3'
miRNA:   3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.