miRNA display CGI


Results 81 - 100 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 141926 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142843 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63023 0.67 0.631497
Target:  5'- aCGCGCa--GGCCuccucgCUGAGUgcGGCGGCc -3'
miRNA:   3'- -GUGCGgcaCCGG------GACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 106121 0.67 0.641317
Target:  5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3'
miRNA:   3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 77601 0.67 0.651131
Target:  5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3'
miRNA:   3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 52879 0.66 0.66093
Target:  5'- gGCGgCGgcGGCgCUGGGCG-GGCGGa -3'
miRNA:   3'- gUGCgGCa-CCGgGACUCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 166748 0.66 0.66093
Target:  5'- gACGuCUG-GGUCCUcgGGGCAggGGUGGCu -3'
miRNA:   3'- gUGC-GGCaCCGGGA--CUCGUa-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63378 0.66 0.679485
Target:  5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3'
miRNA:   3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 48465 0.66 0.680458
Target:  5'- gGgGCCGgggGGCCCugccUGAGCcgGGauguuuucgUGGCg -3'
miRNA:   3'- gUgCGGCa--CCGGG----ACUCGuaCC---------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 107408 0.67 0.625605
Target:  5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3'
miRNA:   3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 4407 0.67 0.621677
Target:  5'- cCugGUgGagaUGGCCCUG-GCcgGGCaGCg -3'
miRNA:   3'- -GugCGgC---ACCGGGACuCGuaCCGcCG- -5'
33366 5' -61.6 NC_007605.1 + 142945 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 143047 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 4047 0.68 0.542963
Target:  5'- cUACGCgCGUGG-CCUGGGCGugaagcugaccuuUGGCucGGCc -3'
miRNA:   3'- -GUGCG-GCACCgGGACUCGU-------------ACCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 67686 0.68 0.572819
Target:  5'- -cCGCCGUGGCCaacgcaGGCAcGGCcgGGCu -3'
miRNA:   3'- guGCGGCACCGGgac---UCGUaCCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 63066 0.68 0.582537
Target:  5'- aGgGCUGcUGGCCCcggGGGagGUGGCGGUc -3'
miRNA:   3'- gUgCGGC-ACCGGGa--CUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 159723 0.68 0.582537
Target:  5'- cCGCuCCGUGGCCCcggGAGCcacGGCGuCa -3'
miRNA:   3'- -GUGcGGCACCGGGa--CUCGua-CCGCcG- -5'
33366 5' -61.6 NC_007605.1 + 7356 0.68 0.592288
Target:  5'- uCACGCCc---CCUUGGGagGUGGCGGCa -3'
miRNA:   3'- -GUGCGGcaccGGGACUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 136548 0.67 0.615788
Target:  5'- cUACGCCG-GGCCCgcGGGCggGGacccgggugccuucuUGGCg -3'
miRNA:   3'- -GUGCGGCaCCGGGa-CUCGuaCC---------------GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.