miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 3' -47.3 NC_007605.1 + 108460 0.67 0.999022
Target:  5'- -gGCC-GGUGGCUGuGgacuggGGUGCGg -3'
miRNA:   3'- ugUGGaCCACUGAU-Ca-----CCACGC- -5'
33369 3' -47.3 NC_007605.1 + 108869 0.67 0.998798
Target:  5'- aGCACCUGGUaGAagUAGUuGUGCc -3'
miRNA:   3'- -UGUGGACCA-CUg-AUCAcCACGc -5'
33369 3' -47.3 NC_007605.1 + 111894 0.69 0.991937
Target:  5'- cACACCUGGUGA--GGUG-UGCc -3'
miRNA:   3'- -UGUGGACCACUgaUCACcACGc -5'
33369 3' -47.3 NC_007605.1 + 113009 0.73 0.933677
Target:  5'- cACAUCUGGaccugGACUGG-GGUGUGa -3'
miRNA:   3'- -UGUGGACCa----CUGAUCaCCACGC- -5'
33369 3' -47.3 NC_007605.1 + 118247 0.66 0.999209
Target:  5'- aGCACUggUGGUGGaggaggacCUGGUGGUGaCa -3'
miRNA:   3'- -UGUGG--ACCACU--------GAUCACCAC-Gc -5'
33369 3' -47.3 NC_007605.1 + 120317 0.68 0.997366
Target:  5'- gGCACCUccGGgagGGCcaacucgUAGUGGUGCc -3'
miRNA:   3'- -UGUGGA--CCa--CUG-------AUCACCACGc -5'
33369 3' -47.3 NC_007605.1 + 121140 0.68 0.995662
Target:  5'- gUugCUGGUGGCUG--GGUGCc -3'
miRNA:   3'- uGugGACCACUGAUcaCCACGc -5'
33369 3' -47.3 NC_007605.1 + 137204 0.76 0.821575
Target:  5'- -uGCCUGGUGAgaagUUGGUGGUGgGg -3'
miRNA:   3'- ugUGGACCACU----GAUCACCACgC- -5'
33369 3' -47.3 NC_007605.1 + 137371 0.67 0.998892
Target:  5'- uGCACCaguuucuuuccgcggUGGUGGCccucGGUGGUGgGc -3'
miRNA:   3'- -UGUGG---------------ACCACUGa---UCACCACgC- -5'
33369 3' -47.3 NC_007605.1 + 137570 0.67 0.998216
Target:  5'- -gGCCU-GUGACUGgugcuuGUGGUGUGg -3'
miRNA:   3'- ugUGGAcCACUGAU------CACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 139178 1.06 0.025401
Target:  5'- gACACCUGGUGACUAGUGGUGCGc -3'
miRNA:   3'- -UGUGGACCACUGAUCACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 139321 0.72 0.953215
Target:  5'- gACACCUGGUGcCUAcGUGauGUGCu -3'
miRNA:   3'- -UGUGGACCACuGAU-CAC--CACGc -5'
33369 3' -47.3 NC_007605.1 + 139815 0.66 0.999365
Target:  5'- uAUGCCUGGUGuccccUUAGUGGgacGCa -3'
miRNA:   3'- -UGUGGACCACu----GAUCACCa--CGc -5'
33369 3' -47.3 NC_007605.1 + 156664 0.72 0.953215
Target:  5'- uGguCCUGGUGGCgggGGUGGUGa- -3'
miRNA:   3'- -UguGGACCACUGa--UCACCACgc -5'
33369 3' -47.3 NC_007605.1 + 158600 0.79 0.687516
Target:  5'- uGCACCgUGGUGGCgGGgGGUGCGg -3'
miRNA:   3'- -UGUGG-ACCACUGaUCaCCACGC- -5'
33369 3' -47.3 NC_007605.1 + 160834 0.68 0.997413
Target:  5'- --gUCUGGacgUGGCUgcGGUGGUGCGc -3'
miRNA:   3'- uguGGACC---ACUGA--UCACCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.