miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 3' -47.3 NC_007605.1 + 78165 0.67 0.998531
Target:  5'- cACugCUGGgguggGGCUGGUGGcauuUGgGg -3'
miRNA:   3'- -UGugGACCa----CUGAUCACC----ACgC- -5'
33369 3' -47.3 NC_007605.1 + 77592 0.73 0.928093
Target:  5'- -gGCCUGacgcuUGGCUGGUGGUGCc -3'
miRNA:   3'- ugUGGACc----ACUGAUCACCACGc -5'
33369 3' -47.3 NC_007605.1 + 76241 0.67 0.997845
Target:  5'- cCACCUGGcuucUGACcGG-GGUGCu -3'
miRNA:   3'- uGUGGACC----ACUGaUCaCCACGc -5'
33369 3' -47.3 NC_007605.1 + 66409 0.66 0.999494
Target:  5'- -gACCaGGUGGgUGGUGuGUGCc -3'
miRNA:   3'- ugUGGaCCACUgAUCAC-CACGc -5'
33369 3' -47.3 NC_007605.1 + 65290 0.75 0.873383
Target:  5'- -uGCCUGGUGAaugcgccuCUGGcGGUGCGg -3'
miRNA:   3'- ugUGGACCACU--------GAUCaCCACGC- -5'
33369 3' -47.3 NC_007605.1 + 63604 0.68 0.99691
Target:  5'- gGCGCCgggGGUGGC-GGUGGaguaUGCu -3'
miRNA:   3'- -UGUGGa--CCACUGaUCACC----ACGc -5'
33369 3' -47.3 NC_007605.1 + 54818 0.67 0.997845
Target:  5'- cCugCUcGUGGacgaUGGUGGUGCGg -3'
miRNA:   3'- uGugGAcCACUg---AUCACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 49124 0.73 0.93898
Target:  5'- cCACCUGGUGAgcGGU-GUGCGg -3'
miRNA:   3'- uGUGGACCACUgaUCAcCACGC- -5'
33369 3' -47.3 NC_007605.1 + 39791 0.66 0.999494
Target:  5'- uGCACCUGGaauGCagGGUGGggGCGu -3'
miRNA:   3'- -UGUGGACCac-UGa-UCACCa-CGC- -5'
33369 3' -47.3 NC_007605.1 + 37254 0.67 0.999022
Target:  5'- ---gCUGGUGcuGCUGGUGGUGgCa -3'
miRNA:   3'- ugugGACCAC--UGAUCACCAC-Gc -5'
33369 3' -47.3 NC_007605.1 + 37044 0.67 0.997845
Target:  5'- gUACC--GUGAgUAGUGGUGUGg -3'
miRNA:   3'- uGUGGacCACUgAUCACCACGC- -5'
33369 3' -47.3 NC_007605.1 + 36657 0.66 0.999494
Target:  5'- uGCGCUgaggUGGUGGg-GGUGGUGgGg -3'
miRNA:   3'- -UGUGG----ACCACUgaUCACCACgC- -5'
33369 3' -47.3 NC_007605.1 + 33303 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 33243 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 32502 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 30234 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 30174 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 29433 0.68 0.99691
Target:  5'- -gGCCUGGUGAC-AG-GGcGCGc -3'
miRNA:   3'- ugUGGACCACUGaUCaCCaCGC- -5'
33369 3' -47.3 NC_007605.1 + 27165 0.69 0.991937
Target:  5'- -aACCUGGgGGCUAGUcugGGUGgGa -3'
miRNA:   3'- ugUGGACCaCUGAUCA---CCACgC- -5'
33369 3' -47.3 NC_007605.1 + 27106 0.67 0.998216
Target:  5'- -uGCCUGG-GugUGGUGGaGUGu -3'
miRNA:   3'- ugUGGACCaCugAUCACCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.