Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33369 | 3' | -47.3 | NC_007605.1 | + | 37044 | 0.67 | 0.997845 |
Target: 5'- gUACC--GUGAgUAGUGGUGUGg -3' miRNA: 3'- uGUGGacCACUgAUCACCACGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 54818 | 0.67 | 0.997845 |
Target: 5'- cCugCUcGUGGacgaUGGUGGUGCGg -3' miRNA: 3'- uGugGAcCACUg---AUCACCACGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 160834 | 0.68 | 0.997413 |
Target: 5'- --gUCUGGacgUGGCUgcGGUGGUGCGc -3' miRNA: 3'- uguGGACC---ACUGA--UCACCACGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 120317 | 0.68 | 0.997366 |
Target: 5'- gGCACCUccGGgagGGCcaacucgUAGUGGUGCc -3' miRNA: 3'- -UGUGGA--CCa--CUG-------AUCACCACGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 20226 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 23295 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 26364 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 29433 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 17157 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 14089 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 32502 | 0.68 | 0.99691 |
Target: 5'- -gGCCUGGUGAC-AG-GGcGCGc -3' miRNA: 3'- ugUGGACCACUGaUCaCCaCGC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 63604 | 0.68 | 0.99691 |
Target: 5'- gGCGCCgggGGUGGC-GGUGGaguaUGCu -3' miRNA: 3'- -UGUGGa--CCACUGaUCACC----ACGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 4393 | 0.68 | 0.99633 |
Target: 5'- -gGCCUGGUGACcugccUGGUGGagaugGCc -3' miRNA: 3'- ugUGGACCACUG-----AUCACCa----CGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 6664 | 0.68 | 0.99633 |
Target: 5'- cCAUCUGGUGGCgcGGUcGGUGUu -3' miRNA: 3'- uGUGGACCACUGa-UCA-CCACGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 121140 | 0.68 | 0.995662 |
Target: 5'- gUugCUGGUGGCUG--GGUGCc -3' miRNA: 3'- uGugGACCACUGAUcaCCACGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 17959 | 0.69 | 0.993046 |
Target: 5'- -aACCUGG-GGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 24096 | 0.69 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 33303 | 0.69 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 111894 | 0.69 | 0.991937 |
Target: 5'- cACACCUGGUGA--GGUG-UGCc -3' miRNA: 3'- -UGUGGACCACUgaUCACcACGc -5' |
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33369 | 3' | -47.3 | NC_007605.1 | + | 21027 | 0.69 | 0.991937 |
Target: 5'- -aACCUGGgGGCUAGUcugGGUGgGa -3' miRNA: 3'- ugUGGACCaCUGAUCA---CCACgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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