miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33369 5' -41.4 NC_007605.1 + 44370 0.66 1
Target:  5'- cGGcCACAGC-CUGACuCUGGGg- -3'
miRNA:   3'- -UC-GUGUUGuGAUUGuGAUCCaa -5'
33369 5' -41.4 NC_007605.1 + 146072 0.66 1
Target:  5'- cAGCAguCGACAUUAucgaguACACUGGGa- -3'
miRNA:   3'- -UCGU--GUUGUGAU------UGUGAUCCaa -5'
33369 5' -41.4 NC_007605.1 + 7444 0.66 1
Target:  5'- uGCAUAACugggugucuaccugaACUAAgACUGGGUg -3'
miRNA:   3'- uCGUGUUG---------------UGAUUgUGAUCCAa -5'
33369 5' -41.4 NC_007605.1 + 4838 0.66 1
Target:  5'- aGGCGCAGCgACUGGCGCaacaccgucucUGGGc- -3'
miRNA:   3'- -UCGUGUUG-UGAUUGUG-----------AUCCaa -5'
33369 5' -41.4 NC_007605.1 + 146346 0.66 1
Target:  5'- uGGaCGCAGCACUuaucAGCGCUGGa-- -3'
miRNA:   3'- -UC-GUGUUGUGA----UUGUGAUCcaa -5'
33369 5' -41.4 NC_007605.1 + 162704 0.66 1
Target:  5'- cGGCugGGCAUaGACGCUgaAGGa- -3'
miRNA:   3'- -UCGugUUGUGaUUGUGA--UCCaa -5'
33369 5' -41.4 NC_007605.1 + 120230 0.66 1
Target:  5'- aGGCGC-AUACUGGCcCUGGGc- -3'
miRNA:   3'- -UCGUGuUGUGAUUGuGAUCCaa -5'
33369 5' -41.4 NC_007605.1 + 64399 0.66 1
Target:  5'- uGUGCAGCACUuuuACAUgcGGUUa -3'
miRNA:   3'- uCGUGUUGUGAu--UGUGauCCAA- -5'
33369 5' -41.4 NC_007605.1 + 109807 0.67 1
Target:  5'- aAGCGCAugGCcGGCAUcugAGGUg -3'
miRNA:   3'- -UCGUGUugUGaUUGUGa--UCCAa -5'
33369 5' -41.4 NC_007605.1 + 65318 0.67 1
Target:  5'- gGGCACAGCggGCcGACACgcagGGGg- -3'
miRNA:   3'- -UCGUGUUG--UGaUUGUGa---UCCaa -5'
33369 5' -41.4 NC_007605.1 + 92326 0.67 1
Target:  5'- cGCcCAGCACcuuGCugUAGGUg -3'
miRNA:   3'- uCGuGUUGUGau-UGugAUCCAa -5'
33369 5' -41.4 NC_007605.1 + 114331 0.67 1
Target:  5'- aGGCACGuacACAgCUGACACggcGGUUg -3'
miRNA:   3'- -UCGUGU---UGU-GAUUGUGau-CCAA- -5'
33369 5' -41.4 NC_007605.1 + 162001 0.67 1
Target:  5'- gGGCACAGCAUcAGCACcuuGGa- -3'
miRNA:   3'- -UCGUGUUGUGaUUGUGau-CCaa -5'
33369 5' -41.4 NC_007605.1 + 139124 0.68 1
Target:  5'- uAGCACAuCACguaGGCACcAGGUg -3'
miRNA:   3'- -UCGUGUuGUGa--UUGUGaUCCAa -5'
33369 5' -41.4 NC_007605.1 + 78423 0.68 0.999999
Target:  5'- aGGCACGugAgUAGaGCUGGGUa -3'
miRNA:   3'- -UCGUGUugUgAUUgUGAUCCAa -5'
33369 5' -41.4 NC_007605.1 + 5031 0.68 0.999999
Target:  5'- uAGCACGGCcacCUGACAUcgUGGGUc -3'
miRNA:   3'- -UCGUGUUGu--GAUUGUG--AUCCAa -5'
33369 5' -41.4 NC_007605.1 + 115719 0.7 0.999986
Target:  5'- cGCAguACACUGGCACacuGGUa -3'
miRNA:   3'- uCGUguUGUGAUUGUGau-CCAa -5'
33369 5' -41.4 NC_007605.1 + 2868 0.7 0.99998
Target:  5'- aAGCACcaGGCACuUGACACUgugAGGUa -3'
miRNA:   3'- -UCGUG--UUGUG-AUUGUGA---UCCAa -5'
33369 5' -41.4 NC_007605.1 + 138982 0.71 0.999946
Target:  5'- cAGCGCAcCACUAGuCACcAGGUg -3'
miRNA:   3'- -UCGUGUuGUGAUU-GUGaUCCAa -5'
33369 5' -41.4 NC_007605.1 + 120559 0.72 0.999694
Target:  5'- gGGCAUAACACUGAgGCUcccGGUc -3'
miRNA:   3'- -UCGUGUUGUGAUUgUGAu--CCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.