miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 162537 0.67 0.994992
Target:  5'- cAGcCGCuCCAGCAGguUCuGGUUc -3'
miRNA:   3'- -UC-GUGuGGUCGUCguAGuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 118468 0.67 0.990789
Target:  5'- gGGCACAauuuCUGGCGGCggCAGGg- -3'
miRNA:   3'- -UCGUGU----GGUCGUCGuaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 37062 0.67 0.990387
Target:  5'- uGCcacCACCAGCAGCAccagcacagccaccUCcagGGGUCa -3'
miRNA:   3'- uCGu--GUGGUCGUCGU--------------AG---UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 93287 0.67 0.994992
Target:  5'- cAGCccaACACCAGCcGGCAcaacgUCAGG-Cg -3'
miRNA:   3'- -UCG---UGUGGUCG-UCGU-----AGUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 15972 0.67 0.994127
Target:  5'- -cUACGCCAGCGcGCcUCAGgGUCu -3'
miRNA:   3'- ucGUGUGGUCGU-CGuAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 122672 0.67 0.994127
Target:  5'- cGCAggacCACCGGCcGCAugcaagugcggUCGGGUCc -3'
miRNA:   3'- uCGU----GUGGUCGuCGU-----------AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 103651 0.67 0.990789
Target:  5'- cGCugGCCGGgGGCAuauagggcaUCAGGg- -3'
miRNA:   3'- uCGugUGGUCgUCGU---------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 52248 0.67 0.992036
Target:  5'- gGGCgaaGCACCggcgugcgaggAGCAGCAUgCAGGcUCg -3'
miRNA:   3'- -UCG---UGUGG-----------UCGUCGUA-GUCC-AG- -5'
33370 5' -48.3 NC_007605.1 + 94655 0.67 0.990789
Target:  5'- gGGCACGuCgGGUGGCGUUGGgGUCg -3'
miRNA:   3'- -UCGUGU-GgUCGUCGUAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 110167 0.67 0.993145
Target:  5'- cGGCGCACCAGCGGCc------- -3'
miRNA:   3'- -UCGUGUGGUCGUCGuaguccag -5'
33370 5' -48.3 NC_007605.1 + 169496 0.67 0.994992
Target:  5'- uGGCGC-CCAGgAGUcgCAGGa- -3'
miRNA:   3'- -UCGUGuGGUCgUCGuaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 36956 0.68 0.986825
Target:  5'- gGGC-CACCGGggaggccagguagccCAGCGUCAGGa- -3'
miRNA:   3'- -UCGuGUGGUC---------------GUCGUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 160637 0.68 0.989394
Target:  5'- uGCGCACCAccGCAGCcacGUCcagacuccggGGGUCc -3'
miRNA:   3'- uCGUGUGGU--CGUCG---UAG----------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 120233 0.68 0.982107
Target:  5'- cGCAUACUGGCccugGGCAgcaGGGUCa -3'
miRNA:   3'- uCGUGUGGUCG----UCGUag-UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 6250 0.68 0.982107
Target:  5'- gGGCACACacucaAGCGGgGUCucggagcuccuAGGUCa -3'
miRNA:   3'- -UCGUGUGg----UCGUCgUAG-----------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 164371 0.68 0.982107
Target:  5'- cAGCACGaaGGCGGCGcUCuuguGGUCa -3'
miRNA:   3'- -UCGUGUggUCGUCGU-AGu---CCAG- -5'
33370 5' -48.3 NC_007605.1 + 61794 0.68 0.986114
Target:  5'- uGCACACgAGCGGC--CAGGg- -3'
miRNA:   3'- uCGUGUGgUCGUCGuaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 166525 0.68 0.984206
Target:  5'- cGCugGCUGGUgGGCAUCGGaGUCg -3'
miRNA:   3'- uCGugUGGUCG-UCGUAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 162047 0.68 0.989394
Target:  5'- cGUACACCcggcccugcagGGCcGCGUCcAGGUCu -3'
miRNA:   3'- uCGUGUGG-----------UCGuCGUAG-UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 72469 0.68 0.989394
Target:  5'- cGGCGCgggaGCCGGCGGCcUCggAGGUg -3'
miRNA:   3'- -UCGUG----UGGUCGUCGuAG--UCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.