miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 56430 0.69 0.977287
Target:  5'- gAGCAgggACUGGCGGCAcugugggggUCGGGUCg -3'
miRNA:   3'- -UCGUg--UGGUCGUCGU---------AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 56165 0.69 0.977287
Target:  5'- gAGCAUauGCCGGUGGCcgcggccCAGGUCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGua-----GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 38380 0.69 0.979804
Target:  5'- aGGC-CACUA-CAGCAUcCAGGUCc -3'
miRNA:   3'- -UCGuGUGGUcGUCGUA-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 103054 0.69 0.977287
Target:  5'- cGGCaACAacCCAGCGGCGUCAGc-- -3'
miRNA:   3'- -UCG-UGU--GGUCGUCGUAGUCcag -5'
33370 5' -48.3 NC_007605.1 + 104666 0.69 0.979804
Target:  5'- cGGCGCcgcCCGGgGGCcagucuccggGUCAGGUCg -3'
miRNA:   3'- -UCGUGu--GGUCgUCG----------UAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 98248 0.69 0.971575
Target:  5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3'
miRNA:   3'- uCGUGUGGUCGU-CGUag---UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 59556 0.7 0.957185
Target:  5'- cGGCACGCCaccugccguggGGCGGUGgugaCAGGUCc -3'
miRNA:   3'- -UCGUGUGG-----------UCGUCGUa---GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 53114 0.7 0.966312
Target:  5'- cGGCugugacuacaccauCACCGuCGGCAUCGGGUCc -3'
miRNA:   3'- -UCGu-------------GUGGUcGUCGUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 24076 0.7 0.964895
Target:  5'- uGGCGCucccucauCCAGCGGCA-CAGGa- -3'
miRNA:   3'- -UCGUGu-------GGUCGUCGUaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 123425 0.71 0.927422
Target:  5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3'
miRNA:   3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 62747 0.71 0.948393
Target:  5'- cGCAgGCgGGCAGCG--GGGUCg -3'
miRNA:   3'- uCGUgUGgUCGUCGUagUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 167948 0.71 0.93848
Target:  5'- uAGUcCGCCAGCGGCAggucCAGGg- -3'
miRNA:   3'- -UCGuGUGGUCGUCGUa---GUCCag -5'
33370 5' -48.3 NC_007605.1 + 169721 0.72 0.901857
Target:  5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3'
miRNA:   3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 112481 0.72 0.901857
Target:  5'- -cCAUACCugcgGGCgAGCAUCGGGUCa -3'
miRNA:   3'- ucGUGUGG----UCG-UCGUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 155175 0.72 0.915212
Target:  5'- cAGgAUAUCuGCAGgAUCAGGUCa -3'
miRNA:   3'- -UCgUGUGGuCGUCgUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 55340 0.72 0.921461
Target:  5'- aGGCGCGCUGGCuccAGCGUCAgccGGUUg -3'
miRNA:   3'- -UCGUGUGGUCG---UCGUAGU---CCAG- -5'
33370 5' -48.3 NC_007605.1 + 153607 0.72 0.92388
Target:  5'- gAGCACgcGCCGGCAGCGUgucugcacaaacuugCAGGcCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUA---------------GUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 122869 0.72 0.915212
Target:  5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3'
miRNA:   3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 37118 0.73 0.871814
Target:  5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3'
miRNA:   3'- uCGUGUGGUcGUCGUA------GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 4331 0.73 0.87973
Target:  5'- gGGCAguCCAGCAGCu---GGUCa -3'
miRNA:   3'- -UCGUguGGUCGUCGuaguCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.