Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 32542 | 1.06 | 0.015826 |
Target: 5'- cAGCACACCAGCAGCAUCAGGUCc -3' miRNA: 3'- -UCGUGUGGUCGUCGUAGUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 44969 | 0.8 | 0.49533 |
Target: 5'- uGGCACAuCCAGCAGCGUguuuUGGGUCu -3' miRNA: 3'- -UCGUGU-GGUCGUCGUA----GUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 94036 | 0.78 | 0.604747 |
Target: 5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3' miRNA: 3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 68075 | 0.77 | 0.705367 |
Target: 5'- gGGCACGCCAGCAagGC-UCAGG-Cg -3' miRNA: 3'- -UCGUGUGGUCGU--CGuAGUCCaG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 77136 | 0.75 | 0.779849 |
Target: 5'- aGGCGCaguccgccaugACCAGCAGCAgcagaaGGGUCa -3' miRNA: 3'- -UCGUG-----------UGGUCGUCGUag----UCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 169559 | 0.74 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 170096 | 0.74 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 171156 | 0.74 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 95374 | 0.74 | 0.837642 |
Target: 5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3' miRNA: 3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 170619 | 0.74 | 0.846545 |
Target: 5'- cGGCGgGCgGGCGGCGggGGGUCg -3' miRNA: 3'- -UCGUgUGgUCGUCGUagUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 37118 | 0.73 | 0.871814 |
Target: 5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3' miRNA: 3'- uCGUGUGGUcGUCGUA------GUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 4331 | 0.73 | 0.87973 |
Target: 5'- gGGCAguCCAGCAGCu---GGUCa -3' miRNA: 3'- -UCGUguGGUCGUCGuaguCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 153607 | 0.72 | 0.92388 |
Target: 5'- gAGCACgcGCCGGCAGCGUgucugcacaaacuugCAGGcCg -3' miRNA: 3'- -UCGUG--UGGUCGUCGUA---------------GUCCaG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 112481 | 0.72 | 0.901857 |
Target: 5'- -cCAUACCugcgGGCgAGCAUCGGGUCa -3' miRNA: 3'- ucGUGUGG----UCG-UCGUAGUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 155175 | 0.72 | 0.915212 |
Target: 5'- cAGgAUAUCuGCAGgAUCAGGUCa -3' miRNA: 3'- -UCgUGUGGuCGUCgUAGUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 122869 | 0.72 | 0.915212 |
Target: 5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3' miRNA: 3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 169721 | 0.72 | 0.901857 |
Target: 5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3' miRNA: 3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 55340 | 0.72 | 0.921461 |
Target: 5'- aGGCGCGCUGGCuccAGCGUCAgccGGUUg -3' miRNA: 3'- -UCGUGUGGUCG---UCGUAGU---CCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 62747 | 0.71 | 0.948393 |
Target: 5'- cGCAgGCgGGCAGCG--GGGUCg -3' miRNA: 3'- uCGUgUGgUCGUCGUagUCCAG- -5' |
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33370 | 5' | -48.3 | NC_007605.1 | + | 123425 | 0.71 | 0.927422 |
Target: 5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3' miRNA: 3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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