Results 21 - 40 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 62747 | 0.71 | 0.948393 |
Target: 5'- cGCAgGCgGGCAGCG--GGGUCg -3' miRNA: 3'- uCGUgUGgUCGUCGUagUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 59556 | 0.7 | 0.957185 |
Target: 5'- cGGCACGCCaccugccguggGGCGGUGgugaCAGGUCc -3' miRNA: 3'- -UCGUGUGG-----------UCGUCGUa---GUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 24076 | 0.7 | 0.964895 |
Target: 5'- uGGCGCucccucauCCAGCGGCA-CAGGa- -3' miRNA: 3'- -UCGUGu-------GGUCGUCGUaGUCCag -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 53114 | 0.7 | 0.966312 |
Target: 5'- cGGCugugacuacaccauCACCGuCGGCAUCGGGUCc -3' miRNA: 3'- -UCGu-------------GUGGUcGUCGUAGUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 98248 | 0.69 | 0.971575 |
Target: 5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3' miRNA: 3'- uCGUGUGGUCGU-CGUag---UCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 103054 | 0.69 | 0.977287 |
Target: 5'- cGGCaACAacCCAGCGGCGUCAGc-- -3' miRNA: 3'- -UCG-UGU--GGUCGUCGUAGUCcag -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 56165 | 0.69 | 0.977287 |
Target: 5'- gAGCAUauGCCGGUGGCcgcggccCAGGUCg -3' miRNA: 3'- -UCGUG--UGGUCGUCGua-----GUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 56430 | 0.69 | 0.977287 |
Target: 5'- gAGCAgggACUGGCGGCAcugugggggUCGGGUCg -3' miRNA: 3'- -UCGUg--UGGUCGUCGU---------AGUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 38380 | 0.69 | 0.979804 |
Target: 5'- aGGC-CACUA-CAGCAUcCAGGUCc -3' miRNA: 3'- -UCGuGUGGUcGUCGUA-GUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 104666 | 0.69 | 0.979804 |
Target: 5'- cGGCGCcgcCCGGgGGCcagucuccggGUCAGGUCg -3' miRNA: 3'- -UCGUGu--GGUCgUCG----------UAGUCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 164371 | 0.68 | 0.982107 |
Target: 5'- cAGCACGaaGGCGGCGcUCuuguGGUCa -3' miRNA: 3'- -UCGUGUggUCGUCGU-AGu---CCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 120233 | 0.68 | 0.982107 |
Target: 5'- cGCAUACUGGCccugGGCAgcaGGGUCa -3' miRNA: 3'- uCGUGUGGUCG----UCGUag-UCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 6250 | 0.68 | 0.982107 |
Target: 5'- gGGCACACacucaAGCGGgGUCucggagcuccuAGGUCa -3' miRNA: 3'- -UCGUGUGg----UCGUCgUAG-----------UCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 166525 | 0.68 | 0.984206 |
Target: 5'- cGCugGCUGGUgGGCAUCGGaGUCg -3' miRNA: 3'- uCGugUGGUCG-UCGUAGUC-CAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 61794 | 0.68 | 0.986114 |
Target: 5'- uGCACACgAGCGGC--CAGGg- -3' miRNA: 3'- uCGUGUGgUCGUCGuaGUCCag -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 36956 | 0.68 | 0.986825 |
Target: 5'- gGGC-CACCGGggaggccagguagccCAGCGUCAGGa- -3' miRNA: 3'- -UCGuGUGGUC---------------GUCGUAGUCCag -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 72469 | 0.68 | 0.989394 |
Target: 5'- cGGCGCgggaGCCGGCGGCcUCggAGGUg -3' miRNA: 3'- -UCGUG----UGGUCGUCGuAG--UCCAg -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 160637 | 0.68 | 0.989394 |
Target: 5'- uGCGCACCAccGCAGCcacGUCcagacuccggGGGUCc -3' miRNA: 3'- uCGUGUGGU--CGUCG---UAG----------UCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 162047 | 0.68 | 0.989394 |
Target: 5'- cGUACACCcggcccugcagGGCcGCGUCcAGGUCu -3' miRNA: 3'- uCGUGUGG-----------UCGuCGUAG-UCCAG- -5' |
|||||||
33370 | 5' | -48.3 | NC_007605.1 | + | 37062 | 0.67 | 0.990387 |
Target: 5'- uGCcacCACCAGCAGCAccagcacagccaccUCcagGGGUCa -3' miRNA: 3'- uCGu--GUGGUCGUCGU--------------AG---UCCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home