miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 61794 0.68 0.986114
Target:  5'- uGCACACgAGCGGC--CAGGg- -3'
miRNA:   3'- uCGUGUGgUCGUCGuaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 62747 0.71 0.948393
Target:  5'- cGCAgGCgGGCAGCG--GGGUCg -3'
miRNA:   3'- uCGUgUGgUCGUCGUagUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 68075 0.77 0.705367
Target:  5'- gGGCACGCCAGCAagGC-UCAGG-Cg -3'
miRNA:   3'- -UCGUGUGGUCGU--CGuAGUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 71070 0.67 0.994127
Target:  5'- cGGC-CACCGcCAGCAUCgacuguaggaacGGGUCu -3'
miRNA:   3'- -UCGuGUGGUcGUCGUAG------------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 72469 0.68 0.989394
Target:  5'- cGGCGCgggaGCCGGCGGCcUCggAGGUg -3'
miRNA:   3'- -UCGUG----UGGUCGUCGuAG--UCCAg -5'
33370 5' -48.3 NC_007605.1 + 77136 0.75 0.779849
Target:  5'- aGGCGCaguccgccaugACCAGCAGCAgcagaaGGGUCa -3'
miRNA:   3'- -UCGUG-----------UGGUCGUCGUag----UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 93287 0.67 0.994992
Target:  5'- cAGCccaACACCAGCcGGCAcaacgUCAGG-Cg -3'
miRNA:   3'- -UCG---UGUGGUCG-UCGU-----AGUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 94036 0.78 0.604747
Target:  5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3'
miRNA:   3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 94655 0.67 0.990789
Target:  5'- gGGCACGuCgGGUGGCGUUGGgGUCg -3'
miRNA:   3'- -UCGUGU-GgUCGUCGUAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 95136 0.66 0.997911
Target:  5'- cGCuuCcCCAGCGGCcucCAGGUCc -3'
miRNA:   3'- uCGu-GuGGUCGUCGua-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 95374 0.74 0.837642
Target:  5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 98248 0.69 0.971575
Target:  5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3'
miRNA:   3'- uCGUGUGGUCGU-CGUag---UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 101178 0.66 0.996413
Target:  5'- aAGUGCAUCAuGCAGCcgacuuGUCAGGg- -3'
miRNA:   3'- -UCGUGUGGU-CGUCG------UAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 103054 0.69 0.977287
Target:  5'- cGGCaACAacCCAGCGGCGUCAGc-- -3'
miRNA:   3'- -UCG-UGU--GGUCGUCGUAGUCcag -5'
33370 5' -48.3 NC_007605.1 + 103651 0.67 0.990789
Target:  5'- cGCugGCCGGgGGCAuauagggcaUCAGGg- -3'
miRNA:   3'- uCGugUGGUCgUCGU---------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 104666 0.69 0.979804
Target:  5'- cGGCGCcgcCCGGgGGCcagucuccggGUCAGGUCg -3'
miRNA:   3'- -UCGUGu--GGUCgUCG----------UAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 105802 0.66 0.997911
Target:  5'- gGGCACAgCCuGaggugGGCAUCAGGg- -3'
miRNA:   3'- -UCGUGU-GGuCg----UCGUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 106429 0.66 0.997196
Target:  5'- cGGCGCACagguuGGCGGCGuucauggccucgcccUgCAGGUCg -3'
miRNA:   3'- -UCGUGUGg----UCGUCGU---------------A-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 107354 0.66 0.996988
Target:  5'- uGCGCGaaAGCAGagacUCGGGUCu -3'
miRNA:   3'- uCGUGUggUCGUCgu--AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 110167 0.67 0.993145
Target:  5'- cGGCGCACCAGCGGCc------- -3'
miRNA:   3'- -UCGUGUGGUCGUCGuaguccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.