miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 32542 1.06 0.015826
Target:  5'- cAGCACACCAGCAGCAUCAGGUCc -3'
miRNA:   3'- -UCGUGUGGUCGUCGUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 118468 0.67 0.990789
Target:  5'- gGGCACAauuuCUGGCGGCggCAGGg- -3'
miRNA:   3'- -UCGUGU----GGUCGUCGuaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 15972 0.67 0.994127
Target:  5'- -cUACGCCAGCGcGCcUCAGgGUCu -3'
miRNA:   3'- ucGUGUGGUCGU-CGuAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 105802 0.66 0.997911
Target:  5'- gGGCACAgCCuGaggugGGCAUCAGGg- -3'
miRNA:   3'- -UCGUGU-GGuCg----UCGUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 169721 0.72 0.901857
Target:  5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3'
miRNA:   3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 122869 0.72 0.915212
Target:  5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3'
miRNA:   3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 24076 0.7 0.964895
Target:  5'- uGGCGCucccucauCCAGCGGCA-CAGGa- -3'
miRNA:   3'- -UCGUGu-------GGUCGUCGUaGUCCag -5'
33370 5' -48.3 NC_007605.1 + 53114 0.7 0.966312
Target:  5'- cGGCugugacuacaccauCACCGuCGGCAUCGGGUCc -3'
miRNA:   3'- -UCGu-------------GUGGUcGUCGUAGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 56165 0.69 0.977287
Target:  5'- gAGCAUauGCCGGUGGCcgcggccCAGGUCg -3'
miRNA:   3'- -UCGUG--UGGUCGUCGua-----GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 94655 0.67 0.990789
Target:  5'- gGGCACGuCgGGUGGCGUUGGgGUCg -3'
miRNA:   3'- -UCGUGU-GgUCGUCGUAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 36956 0.68 0.986825
Target:  5'- gGGC-CACCGGggaggccagguagccCAGCGUCAGGa- -3'
miRNA:   3'- -UCGuGUGGUC---------------GUCGUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 56430 0.69 0.977287
Target:  5'- gAGCAgggACUGGCGGCAcugugggggUCGGGUCg -3'
miRNA:   3'- -UCGUg--UGGUCGUCGU---------AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 94036 0.78 0.604747
Target:  5'- aGGCAcCACCAGCcaAGCGUCAGGcCc -3'
miRNA:   3'- -UCGU-GUGGUCG--UCGUAGUCCaG- -5'
33370 5' -48.3 NC_007605.1 + 72469 0.68 0.989394
Target:  5'- cGGCGCgggaGCCGGCGGCcUCggAGGUg -3'
miRNA:   3'- -UCGUG----UGGUCGUCGuAG--UCCAg -5'
33370 5' -48.3 NC_007605.1 + 95374 0.74 0.837642
Target:  5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 98248 0.69 0.971575
Target:  5'- cGCGCGCUGGCAcGCGgaugaGGGUCc -3'
miRNA:   3'- uCGUGUGGUCGU-CGUag---UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 103651 0.67 0.990789
Target:  5'- cGCugGCCGGgGGCAuauagggcaUCAGGg- -3'
miRNA:   3'- uCGugUGGUCgUCGU---------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 110167 0.67 0.993145
Target:  5'- cGGCGCACCAGCGGCc------- -3'
miRNA:   3'- -UCGUGUGGUCGUCGuaguccag -5'
33370 5' -48.3 NC_007605.1 + 37118 0.73 0.871814
Target:  5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3'
miRNA:   3'- uCGUGUGGUcGUCGUA------GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 167948 0.71 0.93848
Target:  5'- uAGUcCGCCAGCGGCAggucCAGGg- -3'
miRNA:   3'- -UCGuGUGGUCGUCGUa---GUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.