miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33370 5' -48.3 NC_007605.1 + 122869 0.72 0.915212
Target:  5'- cAGUACACaCGGCcgcuGGCAUggCAGGUCa -3'
miRNA:   3'- -UCGUGUG-GUCG----UCGUA--GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 170926 0.66 0.996988
Target:  5'- gAGgACgaaaGCCAGUAGCAgCAGcGUCa -3'
miRNA:   3'- -UCgUG----UGGUCGUCGUaGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 15972 0.67 0.994127
Target:  5'- -cUACGCCAGCGcGCcUCAGgGUCu -3'
miRNA:   3'- ucGUGUGGUCGU-CGuAGUC-CAG- -5'
33370 5' -48.3 NC_007605.1 + 169721 0.72 0.901857
Target:  5'- cAGCGcCACUAGCAGCAgguucucagcaaUCAGGg- -3'
miRNA:   3'- -UCGU-GUGGUCGUCGU------------AGUCCag -5'
33370 5' -48.3 NC_007605.1 + 53765 0.66 0.996413
Target:  5'- uAGCGCaACCAGCAcGuCGUCagagAGGUUg -3'
miRNA:   3'- -UCGUG-UGGUCGU-C-GUAG----UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 107354 0.66 0.996988
Target:  5'- uGCGCGaaAGCAGagacUCGGGUCu -3'
miRNA:   3'- uCGUGUggUCGUCgu--AGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 7094 0.66 0.996988
Target:  5'- gAGCugGCCuGCAGgacagccgaCAUCGGGg- -3'
miRNA:   3'- -UCGugUGGuCGUC---------GUAGUCCag -5'
33370 5' -48.3 NC_007605.1 + 37118 0.73 0.871814
Target:  5'- uGCGCGCCGcCAGCAUggcagcCGGGUCg -3'
miRNA:   3'- uCGUGUGGUcGUCGUA------GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 95374 0.74 0.837642
Target:  5'- aAGCGCcgGCCGGCAGCAccCcGGUCa -3'
miRNA:   3'- -UCGUG--UGGUCGUCGUa-GuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 167948 0.71 0.93848
Target:  5'- uAGUcCGCCAGCGGCAggucCAGGg- -3'
miRNA:   3'- -UCGuGUGGUCGUCGUa---GUCCag -5'
33370 5' -48.3 NC_007605.1 + 38380 0.69 0.979804
Target:  5'- aGGC-CACUA-CAGCAUcCAGGUCc -3'
miRNA:   3'- -UCGuGUGGUcGUCGUA-GUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 171156 0.74 0.846545
Target:  5'- cGGCGgGCgGGCGGCGggGGGUCg -3'
miRNA:   3'- -UCGUgUGgUCGUCGUagUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 160727 0.66 0.996413
Target:  5'- cGC-CGCCAGCAGCcccgacAUCgccgccccagGGGUCu -3'
miRNA:   3'- uCGuGUGGUCGUCG------UAG----------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 162537 0.67 0.994992
Target:  5'- cAGcCGCuCCAGCAGguUCuGGUUc -3'
miRNA:   3'- -UC-GUGuGGUCGUCguAGuCCAG- -5'
33370 5' -48.3 NC_007605.1 + 139124 0.67 0.994992
Target:  5'- uAGCACAUCAcGUAgGCAcCAGGUg -3'
miRNA:   3'- -UCGUGUGGU-CGU-CGUaGUCCAg -5'
33370 5' -48.3 NC_007605.1 + 71070 0.67 0.994127
Target:  5'- cGGC-CACCGcCAGCAUCgacuguaggaacGGGUCu -3'
miRNA:   3'- -UCGuGUGGUcGUCGUAG------------UCCAG- -5'
33370 5' -48.3 NC_007605.1 + 52248 0.67 0.992036
Target:  5'- gGGCgaaGCACCggcgugcgaggAGCAGCAUgCAGGcUCg -3'
miRNA:   3'- -UCG---UGUGG-----------UCGUCGUA-GUCC-AG- -5'
33370 5' -48.3 NC_007605.1 + 123425 0.71 0.927422
Target:  5'- gGGUGCAgcuCCAGCcGCAgCAGGUCa -3'
miRNA:   3'- -UCGUGU---GGUCGuCGUaGUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 62747 0.71 0.948393
Target:  5'- cGCAgGCgGGCAGCG--GGGUCg -3'
miRNA:   3'- uCGUgUGgUCGUCGUagUCCAG- -5'
33370 5' -48.3 NC_007605.1 + 59556 0.7 0.957185
Target:  5'- cGGCACGCCaccugccguggGGCGGUGgugaCAGGUCc -3'
miRNA:   3'- -UCGUGUGG-----------UCGUCGUa---GUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.