miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33371 3' -46.9 NC_007605.1 + 50164 0.66 0.999579
Target:  5'- gAGGCGgc--GGAUGGgGGUGCUu -3'
miRNA:   3'- -UCUGUaucaCCUAUCgCCACGAu -5'
33371 3' -46.9 NC_007605.1 + 40085 0.66 0.999579
Target:  5'- cGACcugGGUGGGU-GCGGUccGCUGg -3'
miRNA:   3'- uCUGua-UCACCUAuCGCCA--CGAU- -5'
33371 3' -46.9 NC_007605.1 + 36650 0.66 0.999332
Target:  5'- aGGugGUGG-GGGUGGUGGggGCg- -3'
miRNA:   3'- -UCugUAUCaCCUAUCGCCa-CGau -5'
33371 3' -46.9 NC_007605.1 + 54814 0.66 0.999332
Target:  5'- cGGGCGaAGUGGG-AGCGG-GCUc -3'
miRNA:   3'- -UCUGUaUCACCUaUCGCCaCGAu -5'
33371 3' -46.9 NC_007605.1 + 158604 0.68 0.997253
Target:  5'- --cCGUGGUGGcgGGgGGUGCg- -3'
miRNA:   3'- ucuGUAUCACCuaUCgCCACGau -5'
33371 3' -46.9 NC_007605.1 + 156188 0.68 0.995384
Target:  5'- cAGGgGUGGUGGAUGuGCGGggGCc- -3'
miRNA:   3'- -UCUgUAUCACCUAU-CGCCa-CGau -5'
33371 3' -46.9 NC_007605.1 + 165521 0.68 0.995307
Target:  5'- uGGACGUGG-GGAUGGggaaaugcauucaCGGUGCa- -3'
miRNA:   3'- -UCUGUAUCaCCUAUC-------------GCCACGau -5'
33371 3' -46.9 NC_007605.1 + 119344 0.69 0.991406
Target:  5'- gGGuCAUGGUGGAUuugaGGCGGcUGCc- -3'
miRNA:   3'- -UCuGUAUCACCUA----UCGCC-ACGau -5'
33371 3' -46.9 NC_007605.1 + 66407 0.7 0.988591
Target:  5'- gGGACcaGGUGGGUGGUGuGUGCc- -3'
miRNA:   3'- -UCUGuaUCACCUAUCGC-CACGau -5'
33371 3' -46.9 NC_007605.1 + 36560 0.7 0.983088
Target:  5'- gGGugGUGGUGGGgggGGUGGUGg-- -3'
miRNA:   3'- -UCugUAUCACCUa--UCGCCACgau -5'
33371 3' -46.9 NC_007605.1 + 114314 0.72 0.962773
Target:  5'- cAGAUGcAGUGGGUgaGGCGGUGCc- -3'
miRNA:   3'- -UCUGUaUCACCUA--UCGCCACGau -5'
33371 3' -46.9 NC_007605.1 + 133610 0.75 0.890052
Target:  5'- uGACAgaAGUGG-UGGCGGUGCUu -3'
miRNA:   3'- uCUGUa-UCACCuAUCGCCACGAu -5'
33371 3' -46.9 NC_007605.1 + 108885 0.75 0.874601
Target:  5'- uGGACGccucGGUGGAgauucccgUGGCGGUGCUGg -3'
miRNA:   3'- -UCUGUa---UCACCU--------AUCGCCACGAU- -5'
33371 3' -46.9 NC_007605.1 + 139442 1.04 0.031401
Target:  5'- gAGACAUAGUGGAUAGCGGUGCUAu -3'
miRNA:   3'- -UCUGUAUCACCUAUCGCCACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.