miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33371 5' -44.9 NC_007605.1 + 164487 0.66 0.999993
Target:  5'- gGCGGCAUGcCAagaUCGCUGAGAc -3'
miRNA:   3'- -UGUCGUGCaGUgaaGGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 76555 0.66 0.999993
Target:  5'- aAUAGCAUGUCAgcUCCACg---- -3'
miRNA:   3'- -UGUCGUGCAGUgaAGGUGauucu -5'
33371 5' -44.9 NC_007605.1 + 49477 0.66 0.99999
Target:  5'- -aGGC-CGcCGCaUCCGCUGGGAc -3'
miRNA:   3'- ugUCGuGCaGUGaAGGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 110996 0.66 0.99999
Target:  5'- cACAGCGCGUCAUguucUCCggcaGCUuuacauAGAg -3'
miRNA:   3'- -UGUCGUGCAGUGa---AGG----UGAu-----UCU- -5'
33371 5' -44.9 NC_007605.1 + 98121 0.66 0.999989
Target:  5'- -uGGCACcaaacagguCUUCCACUGAGAa -3'
miRNA:   3'- ugUCGUGcagu-----GAAGGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 158347 0.66 0.99998
Target:  5'- cCGGUugGUCACggagUCCGCg---- -3'
miRNA:   3'- uGUCGugCAGUGa---AGGUGauucu -5'
33371 5' -44.9 NC_007605.1 + 63404 0.67 0.999948
Target:  5'- gGCGGCugGUggccgaccgcCGCUUCCACa---- -3'
miRNA:   3'- -UGUCGugCA----------GUGAAGGUGauucu -5'
33371 5' -44.9 NC_007605.1 + 149583 0.67 0.999948
Target:  5'- -uGGCugGUgACgggagagCCACUGAGGa -3'
miRNA:   3'- ugUCGugCAgUGaa-----GGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 126711 0.67 0.999948
Target:  5'- cGCAGUgACGUCAUggCCAaUAGGAa -3'
miRNA:   3'- -UGUCG-UGCAGUGaaGGUgAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 104583 0.68 0.999787
Target:  5'- gACA-CACGUgGCUUCCAgaGAGGc -3'
miRNA:   3'- -UGUcGUGCAgUGAAGGUgaUUCU- -5'
33371 5' -44.9 NC_007605.1 + 152359 0.71 0.99759
Target:  5'- aGCAGCAggcuUGUCAUg-CCGCUGAGGa -3'
miRNA:   3'- -UGUCGU----GCAGUGaaGGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 155419 0.71 0.99759
Target:  5'- aGCGGCGCGUgGCaUCCACg---- -3'
miRNA:   3'- -UGUCGUGCAgUGaAGGUGauucu -5'
33371 5' -44.9 NC_007605.1 + 155563 0.71 0.995158
Target:  5'- aACGGCGCGUgACcuucUCCACcGAGAc -3'
miRNA:   3'- -UGUCGUGCAgUGa---AGGUGaUUCU- -5'
33371 5' -44.9 NC_007605.1 + 97755 0.75 0.96875
Target:  5'- aACAGCACG-CAUgaugUCUACUGGGGa -3'
miRNA:   3'- -UGUCGUGCaGUGa---AGGUGAUUCU- -5'
33371 5' -44.9 NC_007605.1 + 139406 1.06 0.041764
Target:  5'- cACAGCACGUCACUUCCACUAAGAc -3'
miRNA:   3'- -UGUCGUGCAGUGAAGGUGAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.