miRNA display CGI


Results 41 - 60 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 147214 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 97511 0.67 1
Target:  5'- ---aCAGGGGGAUgccaGAGGCCGCg -3'
miRNA:   3'- gauaGUUCCUUUG----UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 156525 0.67 1
Target:  5'- ----gAAGGAGAUGAAACCAg- -3'
miRNA:   3'- gauagUUCCUUUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 97298 0.67 1
Target:  5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3'
miRNA:   3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5'
33372 3' -36.5 NC_007605.1 + 63851 0.67 1
Target:  5'- cCUGUCu-GGGGACAuuuAGugCACUg -3'
miRNA:   3'- -GAUAGuuCCUUUGU---UUugGUGA- -5'
33372 3' -36.5 NC_007605.1 + 97070 0.67 1
Target:  5'- -aGUCuGGGAGAUAGAagGCCAUc -3'
miRNA:   3'- gaUAGuUCCUUUGUUU--UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 20547 0.67 1
Target:  5'- ---cCAGGGggGCAAAuugcgugucugggGCCGCc -3'
miRNA:   3'- gauaGUUCCuuUGUUU-------------UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 159490 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 77225 0.67 1
Target:  5'- aUGUUcAGGAgauuGACAGGACUACa -3'
miRNA:   3'- gAUAGuUCCU----UUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 34545 0.67 1
Target:  5'- --cUCAGGGAucgugGACucGGCCACa -3'
miRNA:   3'- gauAGUUCCU-----UUGuuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 150283 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 153352 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 104316 0.67 1
Target:  5'- ---aCAAGGGAGCcuGACCAa- -3'
miRNA:   3'- gauaGUUCCUUUGuuUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 129916 0.67 1
Target:  5'- uCUAUgAGGGucGCAuuuGCCACa -3'
miRNA:   3'- -GAUAgUUCCuuUGUuu-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 102049 0.67 1
Target:  5'- aUGUCAGGGu-GCAGAgggugGCCAUg -3'
miRNA:   3'- gAUAGUUCCuuUGUUU-----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170224 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170746 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 171284 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56390 0.67 1
Target:  5'- ---cCAAGGGGACGu--CCACg -3'
miRNA:   3'- gauaGUUCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 77462 0.67 1
Target:  5'- cCUGUUGAGGugaccGugGGAACCGCc -3'
miRNA:   3'- -GAUAGUUCCu----UugUUUUGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.