Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 63692 | 0.72 | 1 |
Target: 5'- cCUAU-GAGGAAGCcGGGCCGCg -3' miRNA: 3'- -GAUAgUUCCUUUGuUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 56836 | 0.72 | 1 |
Target: 5'- -gAUCAGGGAAGCGuucuUCACUg -3' miRNA: 3'- gaUAGUUCCUUUGUuuu-GGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 78324 | 0.71 | 1 |
Target: 5'- ---gCAuGGAGGCAuAGCCACUg -3' miRNA: 3'- gauaGUuCCUUUGUuUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 1567 | 0.71 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 1044 | 0.71 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 46098 | 0.71 | 1 |
Target: 5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3' miRNA: 3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 42049 | 0.71 | 1 |
Target: 5'- aCUGUCAAGGGcauGCAAucCUACg -3' miRNA: 3'- -GAUAGUUCCUu--UGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 2104 | 0.71 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 44654 | 0.71 | 1 |
Target: 5'- -gGUCAAGGccguggaugcGCAGGACCACg -3' miRNA: 3'- gaUAGUUCCuu--------UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 139379 | 0.71 | 1 |
Target: 5'- ----gAGGGAAACAuGACCACc -3' miRNA: 3'- gauagUUCCUUUGUuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 125681 | 0.71 | 1 |
Target: 5'- gCUGUCAuGGccAAACAAuGCCACa -3' miRNA: 3'- -GAUAGUuCC--UUUGUUuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 507 | 0.71 | 1 |
Target: 5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3' miRNA: 3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 124105 | 0.7 | 1 |
Target: 5'- -cAUC-AGG-AGCAGGGCCACg -3' miRNA: 3'- gaUAGuUCCuUUGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40244 | 0.7 | 1 |
Target: 5'- -gGUCcAGGggGCA--GCCGCg -3' miRNA: 3'- gaUAGuUCCuuUGUuuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 57645 | 0.7 | 1 |
Target: 5'- --uUCGAGGGAGCu--GCCugUg -3' miRNA: 3'- gauAGUUCCUUUGuuuUGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 74262 | 0.7 | 1 |
Target: 5'- ---cCAGGGAGGCAAAuCUACUc -3' miRNA: 3'- gauaGUUCCUUUGUUUuGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40127 | 0.7 | 1 |
Target: 5'- gCUGUCuuuGGGGACcuGACCAUUg -3' miRNA: 3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 108874 | 0.7 | 1 |
Target: 5'- gCUGUCu-GGGGACGAccCCGCUg -3' miRNA: 3'- -GAUAGuuCCUUUGUUuuGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 116162 | 0.7 | 1 |
Target: 5'- --uUCGAGGAGAgCAuAGACCACc -3' miRNA: 3'- gauAGUUCCUUU-GU-UUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 130262 | 0.69 | 1 |
Target: 5'- ---gCAGGGGAAUucAGGCCGCUa -3' miRNA: 3'- gauaGUUCCUUUGu-UUUGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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