miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 140426 0.74 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5'
33372 3' -36.5 NC_007605.1 + 76941 0.75 1
Target:  5'- cCUggUGAGGGAACAcGACCACg -3'
miRNA:   3'- -GAuaGUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 150571 0.69 1
Target:  5'- --uUCAGGGucACGAGACCGg- -3'
miRNA:   3'- gauAGUUCCuuUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 139562 0.69 1
Target:  5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3'
miRNA:   3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 97298 0.67 1
Target:  5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3'
miRNA:   3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5'
33372 3' -36.5 NC_007605.1 + 63851 0.67 1
Target:  5'- cCUGUCu-GGGGACAuuuAGugCACUg -3'
miRNA:   3'- -GAUAGuuCCUUUGU---UUugGUGA- -5'
33372 3' -36.5 NC_007605.1 + 77462 0.67 1
Target:  5'- cCUGUUGAGGugaccGugGGAACCGCc -3'
miRNA:   3'- -GAUAGUUCCu----UugUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56390 0.67 1
Target:  5'- ---cCAAGGGGACGu--CCACg -3'
miRNA:   3'- gauaGUUCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 171284 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170746 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170224 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 169686 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 64006 0.67 1
Target:  5'- ----gAGGGGGACAAGAgCACa -3'
miRNA:   3'- gauagUUCCUUUGUUUUgGUGa -5'
33372 3' -36.5 NC_007605.1 + 115915 0.67 1
Target:  5'- ---aCGAGGAGGgggguccCGAGGCCACUc -3'
miRNA:   3'- gauaGUUCCUUU-------GUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 95710 0.67 1
Target:  5'- ---aCGAGGAGGCGgaAGACCAg- -3'
miRNA:   3'- gauaGUUCCUUUGU--UUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 90377 0.68 1
Target:  5'- ---cCGGGGcAAGCAAAcACCACUg -3'
miRNA:   3'- gauaGUUCC-UUUGUUU-UGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 2515 0.68 1
Target:  5'- ---gCAGGGAcACAcGAACCGCUc -3'
miRNA:   3'- gauaGUUCCUuUGU-UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 3586 0.68 1
Target:  5'- cCUGUCAcaccccaccguGGGAAGCAAGGagCACUu -3'
miRNA:   3'- -GAUAGU-----------UCCUUUGUUUUg-GUGA- -5'
33372 3' -36.5 NC_007605.1 + 153755 0.68 1
Target:  5'- ---cCAGGGAGAUggGgGCCACa -3'
miRNA:   3'- gauaGUUCCUUUGuuU-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 58746 0.68 1
Target:  5'- uCUGggCAGGGAauagGACGAGGCCAa- -3'
miRNA:   3'- -GAUa-GUUCCU----UUGUUUUGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.