miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 10097 0.66 1
Target:  5'- ----aAAGGAAuuuACAAAGCCAUg -3'
miRNA:   3'- gauagUUCCUU---UGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 47143 0.66 1
Target:  5'- -aGUCGAGGAuACGGGcGCCAg- -3'
miRNA:   3'- gaUAGUUCCUuUGUUU-UGGUga -5'
33372 3' -36.5 NC_007605.1 + 12690 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 15759 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 18828 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 21897 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 24965 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 28034 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 156525 0.67 1
Target:  5'- ----gAAGGAGAUGAAACCAg- -3'
miRNA:   3'- gauagUUCCUUUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 97298 0.67 1
Target:  5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3'
miRNA:   3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5'
33372 3' -36.5 NC_007605.1 + 63851 0.67 1
Target:  5'- cCUGUCu-GGGGACAuuuAGugCACUg -3'
miRNA:   3'- -GAUAGuuCCUUUGU---UUugGUGA- -5'
33372 3' -36.5 NC_007605.1 + 95710 0.67 1
Target:  5'- ---aCGAGGAGGCGgaAGACCAg- -3'
miRNA:   3'- gauaGUUCCUUUGU--UUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 115915 0.67 1
Target:  5'- ---aCGAGGAGGgggguccCGAGGCCACUc -3'
miRNA:   3'- gauaGUUCCUUU-------GUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 64006 0.67 1
Target:  5'- ----gAGGGGGACAAGAgCACa -3'
miRNA:   3'- gauagUUCCUUUGUUUUgGUGa -5'
33372 3' -36.5 NC_007605.1 + 169686 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170224 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 170746 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 171284 0.67 1
Target:  5'- ----uGAGGggGCAGggUCGCa -3'
miRNA:   3'- gauagUUCCuuUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56390 0.67 1
Target:  5'- ---cCAAGGGGACGu--CCACg -3'
miRNA:   3'- gauaGUUCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 77462 0.67 1
Target:  5'- cCUGUUGAGGugaccGugGGAACCGCc -3'
miRNA:   3'- -GAUAGUUCCu----UugUUUUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.