Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 63851 | 0.67 | 1 |
Target: 5'- cCUGUCu-GGGGACAuuuAGugCACUg -3' miRNA: 3'- -GAUAGuuCCUUUGU---UUugGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 97298 | 0.67 | 1 |
Target: 5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3' miRNA: 3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 156525 | 0.67 | 1 |
Target: 5'- ----gAAGGAGAUGAAACCAg- -3' miRNA: 3'- gauagUUCCUUUGUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96577 | 0.67 | 1 |
Target: 5'- -gGUCGAGGAgguaGugGAGGCCGg- -3' miRNA: 3'- gaUAGUUCCU----UugUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 10097 | 0.66 | 1 |
Target: 5'- ----aAAGGAAuuuACAAAGCCAUg -3' miRNA: 3'- gauagUUCCUU---UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 47143 | 0.66 | 1 |
Target: 5'- -aGUCGAGGAuACGGGcGCCAg- -3' miRNA: 3'- gaUAGUUCCUuUGUUU-UGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 12690 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 170746 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 170224 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 169686 | 0.67 | 1 |
Target: 5'- ----uGAGGggGCAGggUCGCa -3' miRNA: 3'- gauagUUCCuuUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 150571 | 0.69 | 1 |
Target: 5'- --uUCAGGGucACGAGACCGg- -3' miRNA: 3'- gauAGUUCCuuUGUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 139562 | 0.69 | 1 |
Target: 5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3' miRNA: 3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 58746 | 0.68 | 1 |
Target: 5'- uCUGggCAGGGAauagGACGAGGCCAa- -3' miRNA: 3'- -GAUa-GUUCCU----UUGUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 153755 | 0.68 | 1 |
Target: 5'- ---cCAGGGAGAUggGgGCCACa -3' miRNA: 3'- gauaGUUCCUUUGuuU-UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 3586 | 0.68 | 1 |
Target: 5'- cCUGUCAcaccccaccguGGGAAGCAAGGagCACUu -3' miRNA: 3'- -GAUAGU-----------UCCUUUGUUUUg-GUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 2515 | 0.68 | 1 |
Target: 5'- ---gCAGGGAcACAcGAACCGCUc -3' miRNA: 3'- gauaGUUCCUuUGU-UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 90377 | 0.68 | 1 |
Target: 5'- ---cCGGGGcAAGCAAAcACCACUg -3' miRNA: 3'- gauaGUUCC-UUUGUUU-UGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 95710 | 0.67 | 1 |
Target: 5'- ---aCGAGGAGGCGgaAGACCAg- -3' miRNA: 3'- gauaGUUCCUUUGU--UUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 115915 | 0.67 | 1 |
Target: 5'- ---aCGAGGAGGgggguccCGAGGCCACUc -3' miRNA: 3'- gauaGUUCCUUU-------GUUUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 64006 | 0.67 | 1 |
Target: 5'- ----gAGGGGGACAAGAgCACa -3' miRNA: 3'- gauagUUCCUUUGUUUUgGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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