miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 46265 0.69 1
Target:  5'- -gGUCAGGGuGGGCAGagGACCAUa -3'
miRNA:   3'- gaUAGUUCC-UUUGUU--UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 47143 0.66 1
Target:  5'- -aGUCGAGGAuACGGGcGCCAg- -3'
miRNA:   3'- gaUAGUUCCUuUGUUU-UGGUga -5'
33372 3' -36.5 NC_007605.1 + 47407 0.67 1
Target:  5'- ---cCAAGGggGgAGAGCCAgUg -3'
miRNA:   3'- gauaGUUCCuuUgUUUUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 48546 0.67 1
Target:  5'- -gGUCAGGGAGGCuu-GCCu-- -3'
miRNA:   3'- gaUAGUUCCUUUGuuuUGGuga -5'
33372 3' -36.5 NC_007605.1 + 49639 0.66 1
Target:  5'- -gGUCAgguggcGGGGGACAAccCCACg -3'
miRNA:   3'- gaUAGU------UCCUUUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 50199 0.68 1
Target:  5'- ---cCAAGGGGACGGGccGCCugUg -3'
miRNA:   3'- gauaGUUCCUUUGUUU--UGGugA- -5'
33372 3' -36.5 NC_007605.1 + 53986 0.66 1
Target:  5'- -aGUC-AGGAggUAcauGGGCCACUg -3'
miRNA:   3'- gaUAGuUCCUuuGU---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 54160 0.85 0.992902
Target:  5'- -gAUCGAGGAGACGAgGGCCACg -3'
miRNA:   3'- gaUAGUUCCUUUGUU-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56256 0.67 1
Target:  5'- ----gAGGGGAGCAGAgguuggGCCACg -3'
miRNA:   3'- gauagUUCCUUUGUUU------UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56390 0.67 1
Target:  5'- ---cCAAGGGGACGu--CCACg -3'
miRNA:   3'- gauaGUUCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56738 0.66 1
Target:  5'- --uUCAGGGAAAaacuGGCCAUg -3'
miRNA:   3'- gauAGUUCCUUUguu-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56836 0.72 1
Target:  5'- -gAUCAGGGAAGCGuucuUCACUg -3'
miRNA:   3'- gaUAGUUCCUUUGUuuu-GGUGA- -5'
33372 3' -36.5 NC_007605.1 + 57645 0.7 1
Target:  5'- --uUCGAGGGAGCu--GCCugUg -3'
miRNA:   3'- gauAGUUCCUUUGuuuUGGugA- -5'
33372 3' -36.5 NC_007605.1 + 58746 0.68 1
Target:  5'- uCUGggCAGGGAauagGACGAGGCCAa- -3'
miRNA:   3'- -GAUa-GUUCCU----UUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 62049 0.72 1
Target:  5'- ---cCAGGGGcAGCGAGGCCACc -3'
miRNA:   3'- gauaGUUCCU-UUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 63692 0.72 1
Target:  5'- cCUAU-GAGGAAGCcGGGCCGCg -3'
miRNA:   3'- -GAUAgUUCCUUUGuUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 63851 0.67 1
Target:  5'- cCUGUCu-GGGGACAuuuAGugCACUg -3'
miRNA:   3'- -GAUAGuuCCUUUGU---UUugGUGA- -5'
33372 3' -36.5 NC_007605.1 + 64006 0.67 1
Target:  5'- ----gAGGGGGACAAGAgCACa -3'
miRNA:   3'- gauagUUCCUUUGUUUUgGUGa -5'
33372 3' -36.5 NC_007605.1 + 66071 0.66 1
Target:  5'- -gGUCAGGGcAACGAcGCgGCUc -3'
miRNA:   3'- gaUAGUUCCuUUGUUuUGgUGA- -5'
33372 3' -36.5 NC_007605.1 + 71469 0.66 1
Target:  5'- cCUGggauGGGGAGCGGAgccccGCCGCUg -3'
miRNA:   3'- -GAUagu-UCCUUUGUUU-----UGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.