miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 97298 0.67 1
Target:  5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3'
miRNA:   3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5'
33372 3' -36.5 NC_007605.1 + 97511 0.67 1
Target:  5'- ---aCAGGGGGAUgccaGAGGCCGCg -3'
miRNA:   3'- gauaGUUCCUUUG----UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 100383 0.66 1
Target:  5'- --cUCGAGGGgccGGCAGGAgCACa -3'
miRNA:   3'- gauAGUUCCU---UUGUUUUgGUGa -5'
33372 3' -36.5 NC_007605.1 + 102025 0.67 1
Target:  5'- -cAUgGAGGAAAUAu-ACCACa -3'
miRNA:   3'- gaUAgUUCCUUUGUuuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 102049 0.67 1
Target:  5'- aUGUCAGGGu-GCAGAgggugGCCAUg -3'
miRNA:   3'- gAUAGUUCCuuUGUUU-----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 104316 0.67 1
Target:  5'- ---aCAAGGGAGCcuGACCAa- -3'
miRNA:   3'- gauaGUUCCUUUGuuUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 106432 0.73 1
Target:  5'- -aGUCGAGGgcGCGuuGACCACg -3'
miRNA:   3'- gaUAGUUCCuuUGUu-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 107712 0.77 0.999997
Target:  5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3'
miRNA:   3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 108874 0.7 1
Target:  5'- gCUGUCu-GGGGACGAccCCGCUg -3'
miRNA:   3'- -GAUAGuuCCUUUGUUuuGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 109727 0.77 0.999997
Target:  5'- aCUAaCGAGGAGACAAAGUCACa -3'
miRNA:   3'- -GAUaGUUCCUUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 115915 0.67 1
Target:  5'- ---aCGAGGAGGgggguccCGAGGCCACUc -3'
miRNA:   3'- gauaGUUCCUUU-------GUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 116162 0.7 1
Target:  5'- --uUCGAGGAGAgCAuAGACCACc -3'
miRNA:   3'- gauAGUUCCUUU-GU-UUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 120917 0.68 1
Target:  5'- ---gCAGGGggGCcgggaaGAAGCCGCg -3'
miRNA:   3'- gauaGUUCCuuUG------UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 122307 0.66 1
Target:  5'- uUGUCGgcGGGAuuCGGGGCCAgCUg -3'
miRNA:   3'- gAUAGU--UCCUuuGUUUUGGU-GA- -5'
33372 3' -36.5 NC_007605.1 + 123696 0.66 1
Target:  5'- uCUAUCGgaaaacgcgGGGAAAacAGACCGCa -3'
miRNA:   3'- -GAUAGU---------UCCUUUguUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 124105 0.7 1
Target:  5'- -cAUC-AGG-AGCAGGGCCACg -3'
miRNA:   3'- gaUAGuUCCuUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 125681 0.71 1
Target:  5'- gCUGUCAuGGccAAACAAuGCCACa -3'
miRNA:   3'- -GAUAGUuCC--UUUGUUuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 129704 0.66 1
Target:  5'- cCUA-CAAGGAAACcuaGAGGCUAUg -3'
miRNA:   3'- -GAUaGUUCCUUUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 129916 0.67 1
Target:  5'- uCUAUgAGGGucGCAuuuGCCACa -3'
miRNA:   3'- -GAUAgUUCCuuUGUuu-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 130262 0.69 1
Target:  5'- ---gCAGGGGAAUucAGGCCGCUa -3'
miRNA:   3'- gauaGUUCCUUUGu-UUUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.