miRNA display CGI


Results 101 - 120 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 133952 0.76 1
Target:  5'- cCUGUUuguGGGAGCGGGACUACUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 138007 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 139379 0.71 1
Target:  5'- ----gAGGGAAACAuGACCACc -3'
miRNA:   3'- gauagUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 139562 0.69 1
Target:  5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3'
miRNA:   3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 140426 0.74 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5'
33372 3' -36.5 NC_007605.1 + 141076 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 143197 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 144145 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 147214 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 150283 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 150571 0.69 1
Target:  5'- --uUCAGGGucACGAGACCGg- -3'
miRNA:   3'- gauAGUUCCuuUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 153352 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 153755 0.68 1
Target:  5'- ---cCAGGGAGAUggGgGCCACa -3'
miRNA:   3'- gauaGUUCCUUUGuuU-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 154812 0.69 1
Target:  5'- aUGUCGAuGGGGAUGAGGCCGgUg -3'
miRNA:   3'- gAUAGUU-CCUUUGUUUUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 156421 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 156525 0.67 1
Target:  5'- ----gAAGGAGAUGAAACCAg- -3'
miRNA:   3'- gauagUUCCUUUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 157995 0.66 1
Target:  5'- -cGUCAuagaaAGGGGACAuuuCCACa -3'
miRNA:   3'- gaUAGU-----UCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 159490 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 166588 0.66 1
Target:  5'- ---gCGGGGAAACGAuuaaucagcGCCACg -3'
miRNA:   3'- gauaGUUCCUUUGUUu--------UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 166857 0.69 1
Target:  5'- cCUGUCAacgGGGAGACu--GCCAgUg -3'
miRNA:   3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.