miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 144145 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 143197 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 141076 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 140426 0.74 1
Target:  5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3'
miRNA:   3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5'
33372 3' -36.5 NC_007605.1 + 139562 0.69 1
Target:  5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3'
miRNA:   3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 139379 0.71 1
Target:  5'- ----gAGGGAAACAuGACCACc -3'
miRNA:   3'- gauagUUCCUUUGUuUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 138007 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 133952 0.76 1
Target:  5'- cCUGUUuguGGGAGCGGGACUACUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 130262 0.69 1
Target:  5'- ---gCAGGGGAAUucAGGCCGCUa -3'
miRNA:   3'- gauaGUUCCUUUGu-UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 129916 0.67 1
Target:  5'- uCUAUgAGGGucGCAuuuGCCACa -3'
miRNA:   3'- -GAUAgUUCCuuUGUuu-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 129704 0.66 1
Target:  5'- cCUA-CAAGGAAACcuaGAGGCUAUg -3'
miRNA:   3'- -GAUaGUUCCUUUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 125681 0.71 1
Target:  5'- gCUGUCAuGGccAAACAAuGCCACa -3'
miRNA:   3'- -GAUAGUuCC--UUUGUUuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 124105 0.7 1
Target:  5'- -cAUC-AGG-AGCAGGGCCACg -3'
miRNA:   3'- gaUAGuUCCuUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 123696 0.66 1
Target:  5'- uCUAUCGgaaaacgcgGGGAAAacAGACCGCa -3'
miRNA:   3'- -GAUAGU---------UCCUUUguUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 122307 0.66 1
Target:  5'- uUGUCGgcGGGAuuCGGGGCCAgCUg -3'
miRNA:   3'- gAUAGU--UCCUuuGUUUUGGU-GA- -5'
33372 3' -36.5 NC_007605.1 + 120917 0.68 1
Target:  5'- ---gCAGGGggGCcgggaaGAAGCCGCg -3'
miRNA:   3'- gauaGUUCCuuUG------UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 116162 0.7 1
Target:  5'- --uUCGAGGAGAgCAuAGACCACc -3'
miRNA:   3'- gauAGUUCCUUU-GU-UUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 115915 0.67 1
Target:  5'- ---aCGAGGAGGgggguccCGAGGCCACUc -3'
miRNA:   3'- gauaGUUCCUUU-------GUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 109727 0.77 0.999997
Target:  5'- aCUAaCGAGGAGACAAAGUCACa -3'
miRNA:   3'- -GAUaGUUCCUUUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 108874 0.7 1
Target:  5'- gCUGUCu-GGGGACGAccCCGCUg -3'
miRNA:   3'- -GAUAGuuCCUUUGUUuuGGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.