Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 54160 | 0.85 | 0.992902 |
Target: 5'- -gAUCGAGGAGACGAgGGCCACg -3' miRNA: 3'- gaUAGUUCCUUUGUU-UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 53986 | 0.66 | 1 |
Target: 5'- -aGUC-AGGAggUAcauGGGCCACUg -3' miRNA: 3'- gaUAGuUCCUuuGU---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 50199 | 0.68 | 1 |
Target: 5'- ---cCAAGGGGACGGGccGCCugUg -3' miRNA: 3'- gauaGUUCCUUUGUUU--UGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 49639 | 0.66 | 1 |
Target: 5'- -gGUCAgguggcGGGGGACAAccCCACg -3' miRNA: 3'- gaUAGU------UCCUUUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 48546 | 0.67 | 1 |
Target: 5'- -gGUCAGGGAGGCuu-GCCu-- -3' miRNA: 3'- gaUAGUUCCUUUGuuuUGGuga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 47407 | 0.67 | 1 |
Target: 5'- ---cCAAGGggGgAGAGCCAgUg -3' miRNA: 3'- gauaGUUCCuuUgUUUUGGUgA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 47143 | 0.66 | 1 |
Target: 5'- -aGUCGAGGAuACGGGcGCCAg- -3' miRNA: 3'- gaUAGUUCCUuUGUUU-UGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 46265 | 0.69 | 1 |
Target: 5'- -gGUCAGGGuGGGCAGagGACCAUa -3' miRNA: 3'- gaUAGUUCC-UUUGUU--UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 46098 | 0.71 | 1 |
Target: 5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3' miRNA: 3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 44654 | 0.71 | 1 |
Target: 5'- -gGUCAAGGccguggaugcGCAGGACCACg -3' miRNA: 3'- gaUAGUUCCuu--------UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 43029 | 0.69 | 1 |
Target: 5'- aCUGUCAuGGAAAUugcGGGCCugUa -3' miRNA: 3'- -GAUAGUuCCUUUGu--UUUGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 42049 | 0.71 | 1 |
Target: 5'- aCUGUCAAGGGcauGCAAucCUACg -3' miRNA: 3'- -GAUAGUUCCUu--UGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40382 | 0.66 | 1 |
Target: 5'- --uUCAuGGGggGgGAGGCCGCc -3' miRNA: 3'- gauAGU-UCCuuUgUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40244 | 0.7 | 1 |
Target: 5'- -gGUCcAGGggGCA--GCCGCg -3' miRNA: 3'- gaUAGuUCCuuUGUuuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40127 | 0.7 | 1 |
Target: 5'- gCUGUCuuuGGGGACcuGACCAUUg -3' miRNA: 3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 39541 | 0.69 | 1 |
Target: 5'- ---cCAGGGGAGCccAGCCACc -3' miRNA: 3'- gauaGUUCCUUUGuuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 36874 | 0.67 | 1 |
Target: 5'- ----gAAGGAGGCAAAACCc-- -3' miRNA: 3'- gauagUUCCUUUGUUUUGGuga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 35199 | 0.66 | 1 |
Target: 5'- ----aAGGGggGCAGcggGGCCGCg -3' miRNA: 3'- gauagUUCCuuUGUU---UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 34545 | 0.67 | 1 |
Target: 5'- --cUCAGGGAucgugGACucGGCCACa -3' miRNA: 3'- gauAGUUCCU-----UUGuuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 34172 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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