miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 141076 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 144145 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 43029 0.69 1
Target:  5'- aCUGUCAuGGAAAUugcGGGCCugUa -3'
miRNA:   3'- -GAUAGUuCCUUUGu--UUUGGugA- -5'
33372 3' -36.5 NC_007605.1 + 166857 0.69 1
Target:  5'- cCUGUCAacgGGGAGACu--GCCAgUg -3'
miRNA:   3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 54160 0.85 0.992902
Target:  5'- -gAUCGAGGAGACGAgGGCCACg -3'
miRNA:   3'- gaUAGUUCCUUUGUU-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 107712 0.77 0.999997
Target:  5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3'
miRNA:   3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 95339 0.75 1
Target:  5'- -aGUCAGGGAAGCcgccGCCGCg -3'
miRNA:   3'- gaUAGUUCCUUUGuuu-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 56836 0.72 1
Target:  5'- -gAUCAGGGAAGCGuucuUCACUg -3'
miRNA:   3'- gaUAGUUCCUUUGUuuu-GGUGA- -5'
33372 3' -36.5 NC_007605.1 + 78324 0.71 1
Target:  5'- ---gCAuGGAGGCAuAGCCACUg -3'
miRNA:   3'- gauaGUuCCUUUGUuUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 46098 0.71 1
Target:  5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3'
miRNA:   3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 507 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 1044 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 1567 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 2104 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 42049 0.71 1
Target:  5'- aCUGUCAAGGGcauGCAAucCUACg -3'
miRNA:   3'- -GAUAGUUCCUu--UGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 116162 0.7 1
Target:  5'- --uUCGAGGAGAgCAuAGACCACc -3'
miRNA:   3'- gauAGUUCCUUU-GU-UUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 74262 0.7 1
Target:  5'- ---cCAGGGAGGCAAAuCUACUc -3'
miRNA:   3'- gauaGUUCCUUUGUUUuGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 40127 0.7 1
Target:  5'- gCUGUCuuuGGGGACcuGACCAUUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 108874 0.7 1
Target:  5'- gCUGUCu-GGGGACGAccCCGCUg -3'
miRNA:   3'- -GAUAGuuCCUUUGUUuuGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 124105 0.7 1
Target:  5'- -cAUC-AGG-AGCAGGGCCACg -3'
miRNA:   3'- gaUAGuUCCuUUGUUUUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.