Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 46098 | 0.71 | 1 |
Target: 5'- -gGUCccuAGGAAGCGAcgcggGACCACg -3' miRNA: 3'- gaUAGu--UCCUUUGUU-----UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 78324 | 0.71 | 1 |
Target: 5'- ---gCAuGGAGGCAuAGCCACUg -3' miRNA: 3'- gauaGUuCCUUUGUuUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 56836 | 0.72 | 1 |
Target: 5'- -gAUCAGGGAAGCGuucuUCACUg -3' miRNA: 3'- gaUAGUUCCUUUGUuuu-GGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 95339 | 0.75 | 1 |
Target: 5'- -aGUCAGGGAAGCcgccGCCGCg -3' miRNA: 3'- gaUAGUUCCUUUGuuu-UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 107712 | 0.77 | 0.999997 |
Target: 5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3' miRNA: 3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 54160 | 0.85 | 0.992902 |
Target: 5'- -gAUCGAGGAGACGAgGGCCACg -3' miRNA: 3'- gaUAGUUCCUUUGUU-UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 74262 | 0.7 | 1 |
Target: 5'- ---cCAGGGAGGCAAAuCUACUc -3' miRNA: 3'- gauaGUUCCUUUGUUUuGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 40127 | 0.7 | 1 |
Target: 5'- gCUGUCuuuGGGGACcuGACCAUUg -3' miRNA: 3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 47407 | 0.67 | 1 |
Target: 5'- ---cCAAGGggGgAGAGCCAgUg -3' miRNA: 3'- gauaGUUCCuuUgUUUUGGUgA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 97511 | 0.67 | 1 |
Target: 5'- ---aCAGGGGGAUgccaGAGGCCGCg -3' miRNA: 3'- gauaGUUCCUUUG----UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 50199 | 0.68 | 1 |
Target: 5'- ---cCAAGGGGACGGGccGCCugUg -3' miRNA: 3'- gauaGUUCCUUUGUUU--UGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 120917 | 0.68 | 1 |
Target: 5'- ---gCAGGGggGCcgggaaGAAGCCGCg -3' miRNA: 3'- gauaGUUCCuuUG------UUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 27301 | 0.68 | 1 |
Target: 5'- ----gGAGGAAAUAGAgGCCACa -3' miRNA: 3'- gauagUUCCUUUGUUU-UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 94053 | 0.69 | 1 |
Target: 5'- -cGUCAGgcccuGGAAACAGuuCCACa -3' miRNA: 3'- gaUAGUU-----CCUUUGUUuuGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 39541 | 0.69 | 1 |
Target: 5'- ---cCAGGGGAGCccAGCCACc -3' miRNA: 3'- gauaGUUCCUUUGuuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 46265 | 0.69 | 1 |
Target: 5'- -gGUCAGGGuGGGCAGagGACCAUa -3' miRNA: 3'- gaUAGUUCC-UUUGUU--UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 43029 | 0.69 | 1 |
Target: 5'- aCUGUCAuGGAAAUugcGGGCCugUa -3' miRNA: 3'- -GAUAGUuCCUUUGu--UUUGGugA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 166857 | 0.69 | 1 |
Target: 5'- cCUGUCAacgGGGAGACu--GCCAgUg -3' miRNA: 3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 124105 | 0.7 | 1 |
Target: 5'- -cAUC-AGG-AGCAGGGCCACg -3' miRNA: 3'- gaUAGuUCCuUUGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 108874 | 0.7 | 1 |
Target: 5'- gCUGUCu-GGGGACGAccCCGCUg -3' miRNA: 3'- -GAUAGuuCCUUUGUUuuGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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