miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 138007 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 166857 0.69 1
Target:  5'- cCUGUCAacgGGGAGACu--GCCAgUg -3'
miRNA:   3'- -GAUAGU---UCCUUUGuuuUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 107712 0.77 0.999997
Target:  5'- gCUGUCAaucuccaccacgGGGAGGCuAGAGCCACg -3'
miRNA:   3'- -GAUAGU------------UCCUUUG-UUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 77225 0.67 1
Target:  5'- aUGUUcAGGAgauuGACAGGACUACa -3'
miRNA:   3'- gAUAGuUCCU----UUGUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 54160 0.85 0.992902
Target:  5'- -gAUCGAGGAGACGAgGGCCACg -3'
miRNA:   3'- gaUAGUUCCUUUGUU-UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 100383 0.66 1
Target:  5'- --cUCGAGGGgccGGCAGGAgCACa -3'
miRNA:   3'- gauAGUUCCU---UUGUUUUgGUGa -5'
33372 3' -36.5 NC_007605.1 + 56836 0.72 1
Target:  5'- -gAUCAGGGAAGCGuucuUCACUg -3'
miRNA:   3'- gaUAGUUCCUUUGUuuu-GGUGA- -5'
33372 3' -36.5 NC_007605.1 + 90137 0.66 1
Target:  5'- gUGUCAGGGAuggcuccCAGGGCCGg- -3'
miRNA:   3'- gAUAGUUCCUuu-----GUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 71469 0.66 1
Target:  5'- cCUGggauGGGGAGCGGAgccccGCCGCUg -3'
miRNA:   3'- -GAUagu-UCCUUUGUUU-----UGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 85999 0.67 1
Target:  5'- aUAUCGguGGGAGGCAuaggccCCACUc -3'
miRNA:   3'- gAUAGU--UCCUUUGUuuu---GGUGA- -5'
33372 3' -36.5 NC_007605.1 + 56256 0.67 1
Target:  5'- ----gAGGGGAGCAGAgguuggGCCACg -3'
miRNA:   3'- gauagUUCCUUUGUUU------UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 153352 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 144145 0.67 1
Target:  5'- aCUGggugCAGGGggGCAGgcGGCC-CUa -3'
miRNA:   3'- -GAUa---GUUCCuuUGUU--UUGGuGA- -5'
33372 3' -36.5 NC_007605.1 + 104316 0.67 1
Target:  5'- ---aCAAGGGAGCcuGACCAa- -3'
miRNA:   3'- gauaGUUCCUUUGuuUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 47407 0.67 1
Target:  5'- ---cCAAGGggGgAGAGCCAgUg -3'
miRNA:   3'- gauaGUUCCuuUgUUUUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 27301 0.68 1
Target:  5'- ----gGAGGAAAUAGAgGCCACa -3'
miRNA:   3'- gauagUUCCUUUGUUU-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 46265 0.69 1
Target:  5'- -gGUCAGGGuGGGCAGagGACCAUa -3'
miRNA:   3'- gaUAGUUCC-UUUGUU--UUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 40127 0.7 1
Target:  5'- gCUGUCuuuGGGGACcuGACCAUUg -3'
miRNA:   3'- -GAUAGuu-CCUUUGuuUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 42049 0.71 1
Target:  5'- aCUGUCAAGGGcauGCAAucCUACg -3'
miRNA:   3'- -GAUAGUUCCUu--UGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 507 0.71 1
Target:  5'- uCUGUgCGGGGggGCuggGGGGCCGCg -3'
miRNA:   3'- -GAUA-GUUCCuuUG---UUUUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.