miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33372 3' -36.5 NC_007605.1 + 102025 0.67 1
Target:  5'- -cAUgGAGGAAAUAu-ACCACa -3'
miRNA:   3'- gaUAgUUCCUUUGUuuUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 47407 0.67 1
Target:  5'- ---cCAAGGggGgAGAGCCAgUg -3'
miRNA:   3'- gauaGUUCCuuUgUUUUGGUgA- -5'
33372 3' -36.5 NC_007605.1 + 50199 0.68 1
Target:  5'- ---cCAAGGGGACGGGccGCCugUg -3'
miRNA:   3'- gauaGUUCCUUUGUUU--UGGugA- -5'
33372 3' -36.5 NC_007605.1 + 26579 0.76 0.999999
Target:  5'- uUGUCAguucuAGGGAGgGGGACCACUg -3'
miRNA:   3'- gAUAGU-----UCCUUUgUUUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 143197 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 58746 0.68 1
Target:  5'- uCUGggCAGGGAauagGACGAGGCCAa- -3'
miRNA:   3'- -GAUa-GUUCCU----UUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 139562 0.69 1
Target:  5'- gUAUCGcuGGAAACcgguGGGCCGCUg -3'
miRNA:   3'- gAUAGUu-CCUUUGu---UUUGGUGA- -5'
33372 3' -36.5 NC_007605.1 + 150571 0.69 1
Target:  5'- --uUCAGGGucACGAGACCGg- -3'
miRNA:   3'- gauAGUUCCuuUGUUUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 3586 0.68 1
Target:  5'- cCUGUCAcaccccaccguGGGAAGCAAGGagCACUu -3'
miRNA:   3'- -GAUAGU-----------UCCUUUGUUUUg-GUGA- -5'
33372 3' -36.5 NC_007605.1 + 153755 0.68 1
Target:  5'- ---cCAGGGAGAUggGgGCCACa -3'
miRNA:   3'- gauaGUUCCUUUGuuU-UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 31103 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 34172 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 49639 0.66 1
Target:  5'- -gGUCAgguggcGGGGGACAAccCCACg -3'
miRNA:   3'- gaUAGU------UCCUUUGUUuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 40382 0.66 1
Target:  5'- --uUCAuGGGggGgGAGGCCGCc -3'
miRNA:   3'- gauAGU-UCCuuUgUUUUGGUGa -5'
33372 3' -36.5 NC_007605.1 + 157995 0.66 1
Target:  5'- -cGUCAuagaaAGGGGACAuuuCCACa -3'
miRNA:   3'- gaUAGU-----UCCUUUGUuuuGGUGa -5'
33372 3' -36.5 NC_007605.1 + 122307 0.66 1
Target:  5'- uUGUCGgcGGGAuuCGGGGCCAgCUg -3'
miRNA:   3'- gAUAGU--UCCUuuGUUUUGGU-GA- -5'
33372 3' -36.5 NC_007605.1 + 170173 0.66 1
Target:  5'- -gAUCGGGGggGuCGGGgggcGCCGCg -3'
miRNA:   3'- gaUAGUUCCuuU-GUUU----UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 28034 0.66 1
Target:  5'- --uUCAGGGGcAGCAGGcucACCACc -3'
miRNA:   3'- gauAGUUCCU-UUGUUU---UGGUGa -5'
33372 3' -36.5 NC_007605.1 + 96553 0.73 1
Target:  5'- -gGUCGAGGAGGCAguggAGGCCGg- -3'
miRNA:   3'- gaUAGUUCCUUUGU----UUUGGUga -5'
33372 3' -36.5 NC_007605.1 + 96601 0.73 1
Target:  5'- -gGUCGAGGAgguaGugGAGGCCGCc -3'
miRNA:   3'- gaUAGUUCCU----UugUUUUGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.