Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33372 | 3' | -36.5 | NC_007605.1 | + | 40244 | 0.7 | 1 |
Target: 5'- -gGUCcAGGggGCA--GCCGCg -3' miRNA: 3'- gaUAGuUCCuuUGUuuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 125681 | 0.71 | 1 |
Target: 5'- gCUGUCAuGGccAAACAAuGCCACa -3' miRNA: 3'- -GAUAGUuCC--UUUGUUuUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96577 | 0.67 | 1 |
Target: 5'- -gGUCGAGGAgguaGugGAGGCCGg- -3' miRNA: 3'- gaUAGUUCCU----UugUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 156525 | 0.67 | 1 |
Target: 5'- ----gAAGGAGAUGAAACCAg- -3' miRNA: 3'- gauagUUCCUUUGUUUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 53986 | 0.66 | 1 |
Target: 5'- -aGUC-AGGAggUAcauGGGCCACUg -3' miRNA: 3'- gaUAGuUCCUuuGU---UUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 12690 | 0.66 | 1 |
Target: 5'- --uUCAGGGGcAGCAGGcucACCACc -3' miRNA: 3'- gauAGUUCCU-UUGUUU---UGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 10097 | 0.66 | 1 |
Target: 5'- ----aAAGGAAuuuACAAAGCCAUg -3' miRNA: 3'- gauagUUCCUU---UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 97298 | 0.67 | 1 |
Target: 5'- -gAUUAAGGAccuuguuauGACAAAGCCcGCUc -3' miRNA: 3'- gaUAGUUCCU---------UUGUUUUGG-UGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 47143 | 0.66 | 1 |
Target: 5'- -aGUCGAGGAuACGGGcGCCAg- -3' miRNA: 3'- gaUAGUUCCUuUGUUU-UGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 63851 | 0.67 | 1 |
Target: 5'- cCUGUCu-GGGGACAuuuAGugCACUg -3' miRNA: 3'- -GAUAGuuCCUUUGU---UUugGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 133952 | 0.76 | 1 |
Target: 5'- cCUGUUuguGGGAGCGGGACUACUg -3' miRNA: 3'- -GAUAGuu-CCUUUGUUUUGGUGA- -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 76941 | 0.75 | 1 |
Target: 5'- cCUggUGAGGGAACAcGACCACg -3' miRNA: 3'- -GAuaGUUCCUUUGUuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 139379 | 0.71 | 1 |
Target: 5'- ----gAGGGAAACAuGACCACc -3' miRNA: 3'- gauagUUCCUUUGUuUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 44654 | 0.71 | 1 |
Target: 5'- -gGUCAAGGccguggaugcGCAGGACCACg -3' miRNA: 3'- gaUAGUUCCuu--------UGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 62049 | 0.72 | 1 |
Target: 5'- ---cCAGGGGcAGCGAGGCCACc -3' miRNA: 3'- gauaGUUCCU-UUGUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 63692 | 0.72 | 1 |
Target: 5'- cCUAU-GAGGAAGCcGGGCCGCg -3' miRNA: 3'- -GAUAgUUCCUUUGuUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96553 | 0.73 | 1 |
Target: 5'- -gGUCGAGGAGGCAguggAGGCCGg- -3' miRNA: 3'- gaUAGUUCCUUUGU----UUUGGUga -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 96601 | 0.73 | 1 |
Target: 5'- -gGUCGAGGAgguaGugGAGGCCGCc -3' miRNA: 3'- gaUAGUUCCU----UugUUUUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 106432 | 0.73 | 1 |
Target: 5'- -aGUCGAGGgcGCGuuGACCACg -3' miRNA: 3'- gaUAGUUCCuuUGUu-UUGGUGa -5' |
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33372 | 3' | -36.5 | NC_007605.1 | + | 140426 | 0.74 | 1 |
Target: 5'- uCUAUCAgaauaacagGGGAAGCAAGGCCcccuGCUu -3' miRNA: 3'- -GAUAGU---------UCCUUUGUUUUGG----UGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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