miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33373 5' -46.7 NC_007605.1 + 123476 0.66 0.999805
Target:  5'- uCGGUGGGCAGCc-----CGCaCUUGa -3'
miRNA:   3'- -GCUACCCGUCGauauaaGUG-GAAC- -5'
33373 5' -46.7 NC_007605.1 + 135794 0.66 0.999748
Target:  5'- gGGUGGGCAGCcugggAUAacacgcgUC-CCUUGg -3'
miRNA:   3'- gCUACCCGUCGa----UAUa------AGuGGAAC- -5'
33373 5' -46.7 NC_007605.1 + 144932 0.66 0.999748
Target:  5'- uGAguugGGGguGCUAUuUUCACUaUGg -3'
miRNA:   3'- gCUa---CCCguCGAUAuAAGUGGaAC- -5'
33373 5' -46.7 NC_007605.1 + 96265 0.66 0.999677
Target:  5'- aGGUGGGcCAGCUG----CACCUUc -3'
miRNA:   3'- gCUACCC-GUCGAUauaaGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 95611 0.66 0.999677
Target:  5'- ---aGGGCGGC-----UCACCUUGg -3'
miRNA:   3'- gcuaCCCGUCGauauaAGUGGAAC- -5'
33373 5' -46.7 NC_007605.1 + 65265 0.67 0.999481
Target:  5'- gCGggGGGCucauuGCUAUGcUCGCCg-- -3'
miRNA:   3'- -GCuaCCCGu----CGAUAUaAGUGGaac -5'
33373 5' -46.7 NC_007605.1 + 42113 0.67 0.998996
Target:  5'- aGAUGGaGgAGCUGgg-UCACCUg- -3'
miRNA:   3'- gCUACC-CgUCGAUauaAGUGGAac -5'
33373 5' -46.7 NC_007605.1 + 17862 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 14793 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 33206 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 30137 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 27068 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 23999 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 20931 0.68 0.998491
Target:  5'- aGGUGGuaAGCg--GUUCACCUUc -3'
miRNA:   3'- gCUACCcgUCGauaUAAGUGGAAc -5'
33373 5' -46.7 NC_007605.1 + 109497 0.68 0.997342
Target:  5'- aGAUGGG-AGCUGgcucaaaCACCUUGg -3'
miRNA:   3'- gCUACCCgUCGAUauaa---GUGGAAC- -5'
33373 5' -46.7 NC_007605.1 + 70352 0.69 0.994759
Target:  5'- ---gGGGCAGCUAUGgacCACCa-- -3'
miRNA:   3'- gcuaCCCGUCGAUAUaa-GUGGaac -5'
33373 5' -46.7 NC_007605.1 + 23889 0.72 0.970893
Target:  5'- uGAUGGGCGGgUGUuaggUCACCa-- -3'
miRNA:   3'- gCUACCCGUCgAUAua--AGUGGaac -5'
33373 5' -46.7 NC_007605.1 + 17107 0.72 0.967641
Target:  5'- aCGAUGGGCAGCagauccgcGUGUUCuCCUg- -3'
miRNA:   3'- -GCUACCCGUCGa-------UAUAAGuGGAac -5'
33373 5' -46.7 NC_007605.1 + 139575 0.75 0.893707
Target:  5'- cCGGUGGGCcGCUGU--UCACCUa- -3'
miRNA:   3'- -GCUACCCGuCGAUAuaAGUGGAac -5'
33373 5' -46.7 NC_007605.1 + 32093 1.06 0.028584
Target:  5'- uCGAUGGGCAGCUAUAUUCACCUUGa -3'
miRNA:   3'- -GCUACCCGUCGAUAUAAGUGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.