miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33374 5' -45 NC_007605.1 + 245 0.66 0.999961
Target:  5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3'
miRNA:   3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5'
33374 5' -45 NC_007605.1 + 783 0.66 0.999961
Target:  5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3'
miRNA:   3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5'
33374 5' -45 NC_007605.1 + 1305 0.66 0.999961
Target:  5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3'
miRNA:   3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5'
33374 5' -45 NC_007605.1 + 1843 0.66 0.999961
Target:  5'- cCGGGGGCGCGacCGCCU-CUCUGUc -3'
miRNA:   3'- -GUUCUCGUGU--GUGGGuGAGAUA- -5'
33374 5' -45 NC_007605.1 + 3617 0.69 0.998839
Target:  5'- aCGAGGGCAgACACCaccuGCUCg-- -3'
miRNA:   3'- -GUUCUCGUgUGUGGg---UGAGaua -5'
33374 5' -45 NC_007605.1 + 6248 0.66 0.999972
Target:  5'- -cAGGGCACACACUCAagcgggguCUCg-- -3'
miRNA:   3'- guUCUCGUGUGUGGGU--------GAGaua -5'
33374 5' -45 NC_007605.1 + 7388 0.71 0.994821
Target:  5'- aAGGAuaGCACuCCCACUCUAc -3'
miRNA:   3'- gUUCUcgUGUGuGGGUGAGAUa -5'
33374 5' -45 NC_007605.1 + 8348 0.68 0.999402
Target:  5'- --uGAGCuACGCACCCGCcaugCUGg -3'
miRNA:   3'- guuCUCG-UGUGUGGGUGa---GAUa -5'
33374 5' -45 NC_007605.1 + 8865 0.68 0.999528
Target:  5'- gGAGAGUuCACuGCCCGCUCc-- -3'
miRNA:   3'- gUUCUCGuGUG-UGGGUGAGaua -5'
33374 5' -45 NC_007605.1 + 10470 0.74 0.966551
Target:  5'- gGAGGGCACuCGCCCACUa--- -3'
miRNA:   3'- gUUCUCGUGuGUGGGUGAgaua -5'
33374 5' -45 NC_007605.1 + 21174 0.71 0.992875
Target:  5'- -cAGGGCgGCACGCCCucuCUCUGg -3'
miRNA:   3'- guUCUCG-UGUGUGGGu--GAGAUa -5'
33374 5' -45 NC_007605.1 + 22099 0.66 0.999972
Target:  5'- ---cAGCACACGCCCccauUUCUAa -3'
miRNA:   3'- guucUCGUGUGUGGGu---GAGAUa -5'
33374 5' -45 NC_007605.1 + 31971 1.03 0.05673
Target:  5'- aCAAGAGCACACACCCACUCUAUc -3'
miRNA:   3'- -GUUCUCGUGUGUGGGUGAGAUA- -5'
33374 5' -45 NC_007605.1 + 35855 0.75 0.934781
Target:  5'- gAGGGGCAgGCGCUgACUCUGUg -3'
miRNA:   3'- gUUCUCGUgUGUGGgUGAGAUA- -5'
33374 5' -45 NC_007605.1 + 40000 0.66 0.999957
Target:  5'- gGAGAGCAUGCggguuccaauugugACCCAC-CUAa -3'
miRNA:   3'- gUUCUCGUGUG--------------UGGGUGaGAUa -5'
33374 5' -45 NC_007605.1 + 42053 0.66 0.999961
Target:  5'- uCAAGGGCAUGCAauCCUACgggCUGg -3'
miRNA:   3'- -GUUCUCGUGUGU--GGGUGa--GAUa -5'
33374 5' -45 NC_007605.1 + 51887 0.71 0.992875
Target:  5'- --uGAGCcugaGCACACCCAC-CUAUg -3'
miRNA:   3'- guuCUCG----UGUGUGGGUGaGAUA- -5'
33374 5' -45 NC_007605.1 + 67952 0.67 0.999903
Target:  5'- cCAAGAGCcacCACACCUGCgccCUGa -3'
miRNA:   3'- -GUUCUCGu--GUGUGGGUGa--GAUa -5'
33374 5' -45 NC_007605.1 + 94948 0.69 0.998251
Target:  5'- aCGAG-GCACagGCACCCcCUCUGa -3'
miRNA:   3'- -GUUCuCGUG--UGUGGGuGAGAUa -5'
33374 5' -45 NC_007605.1 + 98067 0.67 0.999871
Target:  5'- -cGGAGCACaugcGCACCUACUUc-- -3'
miRNA:   3'- guUCUCGUG----UGUGGGUGAGaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.