miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33375 3' -46.3 NC_007605.1 + 45481 0.66 0.999796
Target:  5'- -cAGGGGACggaccugcucgggggGCCAGGCcaccAUGCu- -3'
miRNA:   3'- auUCCCCUG---------------UGGUCCG----UAUGuu -5'
33375 3' -46.3 NC_007605.1 + 15437 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 114156 0.66 0.999774
Target:  5'- --cGGGGugGugCCuGGUAUGCAGa -3'
miRNA:   3'- auuCCCCugU--GGuCCGUAUGUU- -5'
33375 3' -46.3 NC_007605.1 + 24644 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 12368 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 27713 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 30782 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 18506 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 21575 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 33851 0.66 0.999774
Target:  5'- -cGGGGGGCAgagaCAGGCAggGCc- -3'
miRNA:   3'- auUCCCCUGUg---GUCCGUa-UGuu -5'
33375 3' -46.3 NC_007605.1 + 27555 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 15279 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 12210 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGcCCAGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------U-GGUCCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 21417 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 24486 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 30624 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 18348 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 33693 0.66 0.999736
Target:  5'- cAGGGGGACccgagggccuuagagGCCAaGGCGUcugGCAc -3'
miRNA:   3'- aUUCCCCUG---------------UGGU-CCGUA---UGUu -5'
33375 3' -46.3 NC_007605.1 + 81576 0.66 0.999707
Target:  5'- -cAGGGGGCAa-GGGCGUAgGu -3'
miRNA:   3'- auUCCCCUGUggUCCGUAUgUu -5'
33375 3' -46.3 NC_007605.1 + 82589 0.66 0.999707
Target:  5'- gAGGaGGGugGCCAGG-AUGCc- -3'
miRNA:   3'- aUUC-CCCugUGGUCCgUAUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.