miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 3' -47.4 NC_007605.1 + 18154 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 21223 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 24292 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 27361 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 30430 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 33499 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 93142 0.69 0.992764
Target:  5'- cCUGGGGCUGGacgacagacUCUGggCCCUGa -3'
miRNA:   3'- aGAUUCCGAUC---------AGGCuaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 19268 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 16199 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 13131 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 72644 0.68 0.997275
Target:  5'- aCUGcacguGGGCUGG-CCGGcCCCCa -3'
miRNA:   3'- aGAU-----UCCGAUCaGGCUaGGGGc -5'
33376 3' -47.4 NC_007605.1 + 68701 0.67 0.998721
Target:  5'- gUCUGGGGCguuguuggAGUCCuGUgCCCa -3'
miRNA:   3'- -AGAUUCCGa-------UCAGGcUAgGGGc -5'
33376 3' -47.4 NC_007605.1 + 22337 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 25406 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 28475 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 31544 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 34613 0.68 0.996697
Target:  5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3'
miRNA:   3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 153052 0.7 0.987336
Target:  5'- --gAAGGCUGG-CaaaGAUCCCCa -3'
miRNA:   3'- agaUUCCGAUCaGg--CUAGGGGc -5'
33376 3' -47.4 NC_007605.1 + 149638 0.72 0.95656
Target:  5'- --aAGGGCUAcGUCCGAgUCUCCGu -3'
miRNA:   3'- agaUUCCGAU-CAGGCU-AGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12827 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.