Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33376 | 3' | -47.4 | NC_007605.1 | + | 22034 | 0.66 | 0.999658 |
Target: 5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3' miRNA: 3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 18965 | 0.66 | 0.999658 |
Target: 5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3' miRNA: 3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 15896 | 0.66 | 0.999658 |
Target: 5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3' miRNA: 3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 24501 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 27570 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 149638 | 0.72 | 0.95656 |
Target: 5'- --aAGGGCUAcGUCCGAgUCUCCGu -3' miRNA: 3'- agaUUCCGAU-CAGGCU-AGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 153052 | 0.7 | 0.987336 |
Target: 5'- --gAAGGCUGG-CaaaGAUCCCCa -3' miRNA: 3'- agaUUCCGAUCaGg--CUAGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 34613 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 31544 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 28475 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 25406 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 22337 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 19268 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 16199 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 13131 | 0.68 | 0.996697 |
Target: 5'- cUCUGGGGcCUGGgccCCGAggguggcUCCCCu -3' miRNA: 3'- -AGAUUCC-GAUCa--GGCU-------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 72644 | 0.68 | 0.997275 |
Target: 5'- aCUGcacguGGGCUGG-CCGGcCCCCa -3' miRNA: 3'- aGAU-----UCCGAUCaGGCUaGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 68701 | 0.67 | 0.998721 |
Target: 5'- gUCUGGGGCguuguuggAGUCCuGUgCCCa -3' miRNA: 3'- -AGAUUCCGa-------UCAGGcUAgGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 137141 | 0.67 | 0.998957 |
Target: 5'- -aUGAGGCUGaaaUCCGuaaggCCCCGa -3' miRNA: 3'- agAUUCCGAUc--AGGCua---GGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 33708 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 30639 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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