miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 3' -47.4 NC_007605.1 + 21223 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18154 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15085 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12016 0.7 0.98892
Target:  5'- cUCUAAGGCccucgGGUCCcccuGGaCCCCGg -3'
miRNA:   3'- -AGAUUCCGa----UCAGG----CUaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 120568 0.7 0.98892
Target:  5'- aCUGAGGCUc--CCGGUCCCa- -3'
miRNA:   3'- aGAUUCCGAucaGGCUAGGGgc -5'
33376 3' -47.4 NC_007605.1 + 17961 0.7 0.986305
Target:  5'- cCUGGGGCUAGUCUGGgugggauuaggcugCCUCa -3'
miRNA:   3'- aGAUUCCGAUCAGGCUa-------------GGGGc -5'
33376 3' -47.4 NC_007605.1 + 93142 0.69 0.992764
Target:  5'- cCUGGGGCUGGacgacagacUCUGggCCCUGa -3'
miRNA:   3'- aGAUUCCGAUC---------AGGCuaGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 137080 0.68 0.994672
Target:  5'- aCUGuguGGCcgAGUCCacGAUCCCUGa -3'
miRNA:   3'- aGAUu--CCGa-UCAGG--CUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 128018 0.67 0.997683
Target:  5'- cUCUAAGGCUGGugcccaaUCCGGacuugcugccUCUCCa -3'
miRNA:   3'- -AGAUUCCGAUC-------AGGCU----------AGGGGc -5'
33376 3' -47.4 NC_007605.1 + 27778 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18571 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 21640 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15502 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12433 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 136492 0.66 0.999319
Target:  5'- cCUGGGGCcGGagCGGUcgCCCCGg -3'
miRNA:   3'- aGAUUCCGaUCagGCUA--GGGGC- -5'
33376 3' -47.4 NC_007605.1 + 137902 0.67 0.998957
Target:  5'- --aAGGGCaguuGUCC-AUCCCCGg -3'
miRNA:   3'- agaUUCCGau--CAGGcUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 164008 0.67 0.998442
Target:  5'- cCUGuGGCccgcgUAG-CCGGUCCCCa -3'
miRNA:   3'- aGAUuCCG-----AUCaGGCUAGGGGc -5'
33376 3' -47.4 NC_007605.1 + 105740 0.67 0.998442
Target:  5'- -aUAGGGCUGGaaaUCUGAgCCCCc -3'
miRNA:   3'- agAUUCCGAUC---AGGCUaGGGGc -5'
33376 3' -47.4 NC_007605.1 + 85176 0.67 0.998442
Target:  5'- cCUGAGGUgccacCCGuUCCCCGg -3'
miRNA:   3'- aGAUUCCGauca-GGCuAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 30847 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.