Results 61 - 62 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33376 | 3' | -47.4 | NC_007605.1 | + | 85176 | 0.67 | 0.998442 |
Target: 5'- cCUGAGGUgccacCCGuUCCCCGg -3' miRNA: 3'- aGAUUCCGauca-GGCuAGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 60845 | 0.7 | 0.983032 |
Target: 5'- --gGGGGCgcAGUCCGAccgccuggggggacUCCCCGg -3' miRNA: 3'- agaUUCCGa-UCAGGCU--------------AGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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