Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33376 | 3' | -47.4 | NC_007605.1 | + | 15502 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 24501 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 91941 | 0.66 | 0.999658 |
Target: 5'- --aGAGGCcAGggCCGAggCCCCGc -3' miRNA: 3'- agaUUCCGaUCa-GGCUa-GGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 12827 | 0.66 | 0.999658 |
Target: 5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3' miRNA: 3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 18363 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 15294 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 99399 | 0.66 | 0.999443 |
Target: 5'- aCUGGGGCUGGUggccugggaggugCUGAggcccgUCCCCu -3' miRNA: 3'- aGAUUCCGAUCA-------------GGCU------AGGGGc -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 47977 | 0.66 | 0.999455 |
Target: 5'- --aGGGGCUGGUCUGugaCCUGg -3' miRNA: 3'- agaUUCCGAUCAGGCuagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 136492 | 0.66 | 0.999319 |
Target: 5'- cCUGGGGCcGGagCGGUcgCCCCGg -3' miRNA: 3'- aGAUUCCGaUCagGCUA--GGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 12225 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 33708 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 130849 | 0.66 | 0.999567 |
Target: 5'- uUCgauuGGGCUGGUCUGAgcaaggugaUCUCUGa -3' miRNA: 3'- -AGau--UCCGAUCAGGCU---------AGGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 18571 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 21432 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 21640 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 30847 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 30639 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 27570 | 0.66 | 0.999155 |
Target: 5'- gCUGAGGCcggGGUCCaGGgggaCCCGa -3' miRNA: 3'- aGAUUCCGa--UCAGG-CUag--GGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 24709 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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33376 | 3' | -47.4 | NC_007605.1 | + | 27778 | 0.66 | 0.999455 |
Target: 5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3' miRNA: 3'- -AGau--UCCGAUCaGGCUagGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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