miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 5' -42.5 NC_007605.1 + 58118 0.66 1
Target:  5'- gGGGCCgc-GGAggccgGGGCCGcagagGCCg -3'
miRNA:   3'- -UUCGGauaCCUaa---CCUGGU-----UGG- -5'
33376 5' -42.5 NC_007605.1 + 139930 0.66 1
Target:  5'- --cCCgg-GGAUcGGACUAGCCu -3'
miRNA:   3'- uucGGauaCCUAaCCUGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 25667 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 91382 0.66 1
Target:  5'- cAGGuCCUGUGGGggUGGgaGCCAaagaggcaggcagggGCCg -3'
miRNA:   3'- -UUC-GGAUACCUa-ACC--UGGU---------------UGG- -5'
33376 5' -42.5 NC_007605.1 + 82577 0.66 1
Target:  5'- uGGCCUGUucaagaGGAggGuGGCCAggauGCCa -3'
miRNA:   3'- uUCGGAUA------CCUaaC-CUGGU----UGG- -5'
33376 5' -42.5 NC_007605.1 + 2858 0.66 1
Target:  5'- gGGGCCgGUGGcggucUGGuaguACCAGCCc -3'
miRNA:   3'- -UUCGGaUACCua---ACC----UGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 137424 0.66 1
Target:  5'- uGGCCUuggGGGUggUGGGCUccuuagacugAGCCa -3'
miRNA:   3'- uUCGGAua-CCUA--ACCUGG----------UUGG- -5'
33376 5' -42.5 NC_007605.1 + 48101 0.66 1
Target:  5'- uAGGCCUGUGGAgcgcuGCUuuGCCa -3'
miRNA:   3'- -UUCGGAUACCUaacc-UGGu-UGG- -5'
33376 5' -42.5 NC_007605.1 + 22598 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 13391 0.66 1
Target:  5'- aGGGCCgGUGGGg-GGAUCcgGGCCa -3'
miRNA:   3'- -UUCGGaUACCUaaCCUGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 64313 0.66 1
Target:  5'- cAGCCUcgGGGUcugaguUGG-CCuuGACCu -3'
miRNA:   3'- uUCGGAuaCCUA------ACCuGG--UUGG- -5'
33376 5' -42.5 NC_007605.1 + 33909 0.66 1
Target:  5'- gGGGCCggucggcUGGGcUGG-CCGGCCc -3'
miRNA:   3'- -UUCGGau-----ACCUaACCuGGUUGG- -5'
33376 5' -42.5 NC_007605.1 + 151946 0.66 1
Target:  5'- -uGCCUuUGGug-GGGCCuuCCc -3'
miRNA:   3'- uuCGGAuACCuaaCCUGGuuGG- -5'
33376 5' -42.5 NC_007605.1 + 74679 0.66 1
Target:  5'- cGAGCCgagAUaGAUcUGGGCCuGCCc -3'
miRNA:   3'- -UUCGGa--UAcCUA-ACCUGGuUGG- -5'
33376 5' -42.5 NC_007605.1 + 153916 0.66 1
Target:  5'- cAGGCgUccggGGAggGGGCCAggGCCu -3'
miRNA:   3'- -UUCGgAua--CCUaaCCUGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 112085 0.66 1
Target:  5'- cAGGUUUG-GGAgUGGGCCAAUa -3'
miRNA:   3'- -UUCGGAUaCCUaACCUGGUUGg -5'
33376 5' -42.5 NC_007605.1 + 17828 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 23966 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 30104 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5'
33376 5' -42.5 NC_007605.1 + 14759 0.67 0.999999
Target:  5'- gGGGCCcgggccGGGUUGGuCCAggGCCu -3'
miRNA:   3'- -UUCGGaua---CCUAACCuGGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.